View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15118_low_1 (Length: 807)
Name: NF15118_low_1
Description: NF15118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15118_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 8e-91; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 614 - 795
Target Start/End: Complemental strand, 20139427 - 20139246
Alignment:
| Q |
614 |
aggatttgctacatcctctatgcataaatgcgccttgcaaaatggtagaccaaagtcttaacatctttagggttgtggttttcttgggatatcctggtat |
713 |
Q |
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| T |
20139427 |
aggatttgctacatcctctatgcataaatgcgccttgcaaaatggtagaccaaagtcttaacatctttagggttgtggttttcttcggatatcctggtat |
20139328 |
T |
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| Q |
714 |
gagaacatcatacttgggcaaaatattgagatcttgtcaacaataggtgtcctgttgtagttaacatgtagtgtcgttctct |
795 |
Q |
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| T |
20139327 |
gagaacatcatacttgggcaaaatatcgagatcttgtcaacaataggtgtccggttgtagttaacatgtagtgtcgttctct |
20139246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 17 - 298
Target Start/End: Complemental strand, 20140194 - 20139921
Alignment:
| Q |
17 |
agaattagtactgattatttatttctat-ctggataatgatattgctatctatagaatccaatctttaataacatagtcctcatgttacctgttg---tg |
112 |
Q |
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| T |
20140194 |
agaattattactgattatttatttctatactgggcaatgatattgctat----agaatctactctttaataacataaccctcatgtcacctgtgggattg |
20140099 |
T |
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| Q |
113 |
tagggttgtattcatgggagcacaattgaaggttactgcagcacacttcaacgttgattagttcatcagctagcatagattcatgaactgttgttctctt |
212 |
Q |
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| T |
20140098 |
tagggttgtattcatgggagcacaattgaaggttactgcagcacacttcaacgttgat--------cagctagcagagattcatgaacaattgttctctt |
20140007 |
T |
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| Q |
213 |
tggtgtgagcttccagtggccgcggttggcattggtgtgtggtagaatgttgtttcaagctggtggtggagtttgtattttgggtc |
298 |
Q |
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| T |
20140006 |
tggtgtgagcttccaatggccgcggttaccattggtgtgtggtagcatgttgtttcaagctggtgatggagtttgtattttgggtc |
20139921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 405 - 504
Target Start/End: Complemental strand, 20139887 - 20139786
Alignment:
| Q |
405 |
atctatctgctagtgcagagttgctgtatctttccgtacttt--ctggagtatgctttgtacttcaagtaaaccgttctaataaattcattttccctttc |
502 |
Q |
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| T |
20139887 |
atctatctgctagtgcagaattgttgtatctttccgcactttatctcgagtatgctttgtacttcaagtaaaccgttctaataaattcattttccctttc |
20139788 |
T |
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| Q |
503 |
at |
504 |
Q |
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| T |
20139787 |
at |
20139786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 46 - 188
Target Start/End: Complemental strand, 20132934 - 20132798
Alignment:
| Q |
46 |
tggataatgatattgctatctatagaatccaatctttaataacatagtcctcatgttacctgttgtgtagggttgtattcatgggagcacaattgaaggt |
145 |
Q |
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| T |
20132934 |
tggataatgatattgctat----agaatccaacctttaataacatagccctcatgttacattttgtgtagggttgtattcatgggagcacaattgaaggt |
20132839 |
T |
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| Q |
146 |
tactgcagcacacttcaacgttgattagttcatcagctagcat |
188 |
Q |
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| T |
20132838 |
tgttgcag--aacttcaacgttgataagctcattaactagcat |
20132798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 20373832 - 20373765
Alignment:
| Q |
68 |
tagaatccaatctttaataacatagtcctcatgttacctgttgtgtagggttgtattcatgggagcac |
135 |
Q |
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| T |
20373832 |
tagaatctaatctttaataacatagccctcatgttacctgtggtgtagggttgtattcatggcagcac |
20373765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 532 - 577
Target Start/End: Complemental strand, 20139758 - 20139713
Alignment:
| Q |
532 |
ttggtttcaatttagttttcttaatcattgattcattctttataga |
577 |
Q |
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| T |
20139758 |
ttggtttcaatttagttttcttaatcatagattcattctttataga |
20139713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 20423456 - 20423533
Alignment:
| Q |
65 |
ctatagaatccaatctttaataacatagtcctcatgttacctgttgtgtagggttgtattcatgggagcacaattgaa |
142 |
Q |
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| T |
20423456 |
ctatagaatctaatctttaataacacagccctcattttacctgtgatgtaggtttgtattcatgtcagcacgattgaa |
20423533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 168
Target Start/End: Original strand, 20339679 - 20339772
Alignment:
| Q |
77 |
atctttaataacatagtcctc--atgttacctgttgtgtagggttgtattcatgggagcacaattgaaggttactgcagcacacttcaacgttg |
168 |
Q |
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| T |
20339679 |
atctttaataacatagccctcgtatgttacctttggtgtagggttgtattgagggcagcacggttgaaggttgttgcagcccagttcaacgttg |
20339772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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