View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15118_low_2 (Length: 646)

Name: NF15118_low_2
Description: NF15118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15118_low_2
NF15118_low_2
[»] chr5 (4 HSPs)
chr5 (288-627)||(24081508-24081847)
chr5 (288-467)||(29027946-29028126)
chr5 (289-333)||(29028883-29028927)
chr5 (370-446)||(11167872-11167948)
[»] chr7 (2 HSPs)
chr7 (370-459)||(21939301-21939389)
chr7 (367-443)||(41415636-41415712)
[»] chr8 (1 HSPs)
chr8 (370-438)||(18896426-18896494)
[»] chr1 (2 HSPs)
chr1 (370-434)||(35820103-35820167)
chr1 (370-418)||(23395112-23395160)
[»] chr3 (2 HSPs)
chr3 (396-438)||(36859779-36859821)
chr3 (366-434)||(19404393-19404461)
[»] scaffold0007 (1 HSPs)
scaffold0007 (369-438)||(201305-201374)


Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-163; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 288 - 627
Target Start/End: Complemental strand, 24081847 - 24081508
Alignment:
Q  288 ttcatgttgattaggggatcgataatgatggcgtaaatatacttgagttcaattgttcagatatctactttcaatataaaaaaggcttaatagcagtttt 387  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24081847 ttcatgctgattaggggatcgataatgatggcgtaaatatacttgagttcaattgttcagatatctactttcaatataaaaaaggcttaatagcagtttt 24081748  T
Q  388 ggttccccaagtatcacaaacttgcgattttagccctctatgaaaaacaattacaaccccaaccccctaagtccagcccccttttgcactagaaatcgta 487  Q
    ||||||| ||||||||| |||||| ||||||||| ||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24081747 ggttccctaagtatcacgaacttgggattttagctctcaataaaaaacaattacaaccccaaccccataagtccagcccccttttgcactagaaatcgta 24081648  T
Q  488 acttcacacaagcagcaatatgtaatgacaattttctcagccactatttgaattacatgactcaactactgtaattaaacttttactacacaaatatcag 587  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  24081647 acttcacacaagcagcaatatgtaatggcaattttctcagccactatttgaattacatgactcaactactgtaattaaacttttactacacaaatatcac 24081548  T
Q  588 gcatttctctcataacacataaggagtagcagtataggag 627  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  24081547 gcatttctctcatgacacatatggagtagcagtataggag 24081508  T

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Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 288 - 467
Target Start/End: Complemental strand, 29028126 - 29027946
Alignment:
Q  288 ttcatgttgattaggggatcgataatgatggcgtaaatatacttgagttcaattgttcagatatctactttcaatataa--aaaaggcttaatagcagtt 385  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||  |||||||||| ||||| ||    
T  29028126 ttcatgttgattaggggatcgataatgatggcataaatatacttgagttcaattattcagatatctaatttcaatataaaaaaaaggcttagtagcactt 29028027  T
Q  386 ttggttccccaagtatcacaaacttgcgattttagccctctatgaaaaacaattacaaccccaaccccctaagtccagcccc 467  Q
    ||||||||| |||||||||||||||| ||||||||||| |||| |||||||||||| ||||||| |||||||||||| ||||    
T  29028026 ttggttccctaagtatcacaaacttgtgattttagccccctataaaaaacaattacgaccccaa-cccctaagtccaacccc 29027946  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 29028927 - 29028883
Alignment:
Q  289 tcatgttgattaggggatcgataatgatggcgtaaatatacttga 333  Q
    |||||||||| || ||||||||| |||||||||||||||||||||    
T  29028927 tcatgttgatcagaggatcgatagtgatggcgtaaatatacttga 29028883  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 370 - 446
Target Start/End: Original strand, 11167872 - 11167948
Alignment:
Q  370 aggcttaatagcagttttggttccccaagtatcacaaacttgcgattttagccctctatgaaaaacaattacaaccc 446  Q
    ||||||||||| |||||||   ||  |||||||||||||||| |||||| |||| ||| |||||  |||||||||||    
T  11167872 aggcttaatagtagttttgaccccttaagtatcacaaacttgtgattttggccccctaagaaaataaattacaaccc 11167948  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 370 - 459
Target Start/End: Complemental strand, 21939389 - 21939301
Alignment:
Q  370 aggcttaatagcagttttggttccccaagtatcacaaacttgcgattttagccctctatgaaaaacaattacaaccccaaccccctaagt 459  Q
    ||||||||||||||||||||  ||| ||||||||| || |||||||||| |||| |||  ||||||||||||||  ||||||||||||||    
T  21939389 aggcttaatagcagttttggccccctaagtatcacgaagttgcgattttggccccctaaaaaaaacaattacaa-tccaaccccctaagt 21939301  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 367 - 443
Target Start/End: Original strand, 41415636 - 41415712
Alignment:
Q  367 aaaaggcttaatagcagttttggttccccaagtatcacaaacttgcgattttagccctctatgaaaaacaattacaa 443  Q
    |||| ||||||| |||||||||||  || ||||||||||| ||||||||||| ||||  ||| ||||||||| ||||    
T  41415636 aaaaagcttaattgcagttttggtcacctaagtatcacaatcttgcgattttggccccttataaaaaacaataacaa 41415712  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 370 - 438
Target Start/End: Original strand, 18896426 - 18896494
Alignment:
Q  370 aggcttaatagcagttttggttccccaagtatcacaaacttgcgattttagccctctatgaaaaacaat 438  Q
    ||||||||| ||||||||||| ||| ||| ||||||| ||||||||||| | || |||| |||||||||    
T  18896426 aggcttaattgcagttttggtcccctaagcatcacaatcttgcgattttggtcccctataaaaaacaat 18896494  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 370 - 434
Target Start/End: Complemental strand, 35820167 - 35820103
Alignment:
Q  370 aggcttaatagcagttttggttccccaagtatcacaaacttgcgattttagccctctatgaaaaa 434  Q
    ||||||||| ||||||||||  ||| ||||||||||| ||||||||||| |||| |||| |||||    
T  35820167 aggcttaattgcagttttggccccctaagtatcacaatcttgcgattttggccccctataaaaaa 35820103  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 23395112 - 23395160
Alignment:
Q  370 aggcttaatagcagttttggttccccaagtatcacaaacttgcgatttt 418  Q
    ||||||||| | ||||||||| ||| ||||||||||| |||||||||||    
T  23395112 aggcttaattgtagttttggtcccctaagtatcacaatcttgcgatttt 23395160  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 438
Target Start/End: Complemental strand, 36859821 - 36859779
Alignment:
Q  396 aagtatcacaaacttgcgattttagccctctatgaaaaacaat 438  Q
    ||||||||| ||||||||||||| ||||||||| |||||||||    
T  36859821 aagtatcacgaacttgcgattttggccctctataaaaaacaat 36859779  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 366 - 434
Target Start/End: Original strand, 19404393 - 19404461
Alignment:
Q  366 aaaaaggcttaatagcagttttggttccccaagtatcacaaacttgcgattttagccctctatgaaaaa 434  Q
    ||||| |||||||| ||||||| || ||| || | |||| || ||||||||||||||||||| ||||||    
T  19404393 aaaaaagcttaataacagttttcgtcccctaactttcacgaagttgcgattttagccctctaagaaaaa 19404461  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 438
Target Start/End: Original strand, 201305 - 201374
Alignment:
Q  369 aaggcttaatagcagttttggttccccaagtatcacaaacttgcgattttagccctctatgaaaaacaat 438  Q
    |||||||||| |||||||||   ||| ||||||||||| |||||||||||  |||||| | |||||||||    
T  201305 aaggcttaattgcagttttgaccccctaagtatcacaatcttgcgattttgaccctctgtaaaaaacaat 201374  T

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