View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15118_low_4 (Length: 513)
Name: NF15118_low_4
Description: NF15118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15118_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 251 - 503
Target Start/End: Complemental strand, 8393231 - 8392973
Alignment:
| Q |
251 |
agatatgaacctcatacctttgactatatattatgcattgtacatatcagttaaattaaactcacaaaaacaccca-ttttatttttcatacagatattc |
349 |
Q |
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| T |
8393231 |
agatttgaatctcatacctttaactatatattatgcattgtacataccagctaaattaaactcacatagacacccccttttatttttcataccaatattc |
8393132 |
T |
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| Q |
350 |
aacatctcattttccttttaccactctttcttattatcatatattcaccatatgtattattttactctcttgatttctttttctctctagtgg-----ta |
444 |
Q |
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| T |
8393131 |
aacatctcattttccttttaccactctttcttattatcatatattcaccatatgtattattttactctcttgatttctttttctctctagtggtaaagta |
8393032 |
T |
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| Q |
445 |
aaatggttttgggtgttgaagaattattttccttcttttaatttgtgtatgtatctgtg |
503 |
Q |
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| T |
8393031 |
aaatggttttgggtgttgaagaattattttccttcttttaatttgtgtatgtatatgtg |
8392973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 41 - 190
Target Start/End: Complemental strand, 8393435 - 8393286
Alignment:
| Q |
41 |
attgttattgttatatgttaggttgtgaataaattaagttttgtttattgagtgtggagaagaaaagagatggtgtggtatggtatggtatgggaaatgg |
140 |
Q |
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| T |
8393435 |
attgttattgttatattttaggttgtgaataaattaagttttgtttattgagtgtggagaagaaaagagagggtgtggtatggtatggtatgggaaatgg |
8393336 |
T |
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| Q |
141 |
gaatcattgggtttgttatttcctcttgttttctagtaatttcggtgttc |
190 |
Q |
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| T |
8393335 |
gaatcattgggtttgttattttctcttgttttctagtaattttggtgttc |
8393286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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