View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15118_low_8 (Length: 350)
Name: NF15118_low_8
Description: NF15118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15118_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 25669429 - 25669745
Alignment:
| Q |
19 |
gcaagtgtccactcctccaacaaatgatgagttgtatcaactacatgagcaactatttatataacatcatcctacactttgaggtagtggtgcttccaaa |
118 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
25669429 |
gcaagtgtccactcgtccaacaaatgatgagttgtatcaactacatgcgcagctatttatgtaacatcatcctacactttgaggtagtggtgcttccaga |
25669528 |
T |
|
| Q |
119 |
aactccaaagcaaactagccatacaagcatccagctctggcgtgaaacgttataacaacaaaaagaccaattttgcttccaaactagtgtcactgacaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25669529 |
aactccaaagcaaactagccatacaagcatccagttctggcgtgaaacgttataacaacaaaaagaccaattttgcttccaaactagtgtcactgacaat |
25669628 |
T |
|
| Q |
219 |
ctgttgaatgtcgttccaaaggtcggccagaatccaaacttgcattgtaaatgggcaagtaagaaacatgtgagccagatcctaatcagaagaaacacaa |
318 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25669629 |
ctgttgaatgtcgttccaaaggtcggccagaatccaaacttgcattgtaaatgggcaagtaagaaacatgtgagccaaatcctaatcagaagaaacacaa |
25669728 |
T |
|
| Q |
319 |
ctaacacactttatagg |
335 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
25669729 |
ctaacacactttatagg |
25669745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 25827902 - 25828210
Alignment:
| Q |
19 |
gcaagtgtccactcctccaacaaatgatgagttgtatcaactacatgagcaactatttatataacatcatcctacactttgaggtagtggtgcttccaaa |
118 |
Q |
| |
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||||||||||||||||||||||||||||||| | |||||||||| ||||||||||| | | |||||||||||||||||||||||||||| ||||||| | |
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| T |
25827902 |
gcaagtgtccactcctccaacaaatgatgagctttatcaactacttgagcaactatctttttaacatcatcctacactttgaggtagtg-tgcttccgta |
25828000 |
T |
|
| Q |
119 |
aactccaaagcaaactagccatacaagcatccagctctggcgtgaaacgttataacaacaaaaagaccaattttgcttccaaactagtgtcactgacaat |
218 |
Q |
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|||||| || ||||||||||||||||| | |||| |||||||||||||||| ||| |||||||||| | ||||||||||||||||| | ||||||||||| |
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| T |
25828001 |
aactccgaaacaaactagccatacaagtagccagttctggcgtgaaacgttgtaaaaacaaaaagatcgattttgcttccaaactactatcactgacaat |
25828100 |
T |
|
| Q |
219 |
ctgttgaatgtcgttccaaaggtcggccagaatccaaacttgcattgtaaatgggcaagtaagaaacatgtgagccagatcctaatcagaagaaacacaa |
318 |
Q |
| |
|
|| ||||||||||||||||||| | |||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| |
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| T |
25828101 |
ctattgaatgtcgttccaaaggacagccataatccaaacttacattgtaaatgggcaagtaaaaaacatgtgagccatatcctaatcataagaaacacaa |
25828200 |
T |
|
| Q |
319 |
ctaacacact |
328 |
Q |
| |
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| |||||||| |
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|
| T |
25828201 |
ccaacacact |
25828210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 25472138 - 25472437
Alignment:
| Q |
19 |
gcaagtgtccactcctccaacaaatgatgagttgtatcaactacatgagcaactatttatataacatcatcctacactttgaggtagtggtgcttccaaa |
118 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | || ||||||| ||||||| ||| | | ||||||||| ||||| |||| || || |||||||| | | |
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|
| T |
25472138 |
gcaagtgtccactcctacaacaaatgatgagctttaccaactacttgagcaattatctttgtaacatcattctacattttgtggcagcggtgcttcgata |
25472237 |
T |
|
| Q |
119 |
aactccaaagcaaactagccatacaagcatccagctctggcgtgaaacgttataacaacaaaaagaccaattttgcttccaaactagtgtcactgacaat |
218 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| ||||| ||||||| || ||| ||||||||| | |||||||||||||| ||||||| |
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|
| T |
25472238 |
aactccaaagcaaactagccatacaagtagccagttctggtgtgaaacattgtaattacaaaaagatcg---------ccaaactagtgtcattgacaat |
25472328 |
T |
|
| Q |
219 |
ctgttgaatgtcgttccaaaggtcggccagaatccaaacttgcattgtaaatgggcaagtaagaaacatgtgagccagatcctaatcagaagaaacacaa |
318 |
Q |
| |
|
|| |||||||| |||||||||| | ||||||| ||||||||||| ||||||||||||||||| | ||| |||||||| |||||||| ||||||||||||| |
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|
| T |
25472329 |
ctattgaatgttgttccaaaggccagccagaa-ccaaacttgcaatgtaaatgggcaagtaaaagacaagtgagccaaatcctaattagaagaaacacaa |
25472427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 154 - 335
Target Start/End: Original strand, 25429567 - 25429748
Alignment:
| Q |
154 |
tctggcgtgaaacgttataacaacaaaaagaccaattttgcttccaaactagtgtcactgacaatctgttgaatgtcgttccaaaggtcggccagaatcc |
253 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| | || || | ||||||||||||| ||||| ||||||||||||||||||||| ||| ||| ||||| |
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| T |
25429567 |
tctgccgtgaaacgttgtaacaacaaaaagatcgcttctgttgtcaaactagtgtcagtgacagtctgttgaatgtcgttccaaatgtcagcctcaatcc |
25429666 |
T |
|
| Q |
254 |
aaacttgcattgtaaatgggcaagtaagaaacatgtgagccagatcctaatcagaagaaacacaactaacacactttatagg |
335 |
Q |
| |
|
||||||| |||| |||||| |||||| | ||| |||||||| ||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
25429667 |
aaacttggattgcaaatggcgaagtaaaagacacgtgagccaaatcttaatcagaagaaacacaactaacacactttgtagg |
25429748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 154 - 335
Target Start/End: Complemental strand, 24889345 - 24889164
Alignment:
| Q |
154 |
tctggcgtgaaacgttataacaacaaaaagaccaattttgcttccaaactagtgtcactgacaatctgttgaatgtcgttccaaaggtcggccagaatcc |
253 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||| | || || | ||||||||||||| ||||| ||||||||||||||||||||| ||| ||| ||||| |
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| T |
24889345 |
tctgccgtgaaacgttgtaacaacataaagatcgcttctgttgtcaaactagtgtcagtgacagtctgttgaatgtcgttccaaatgtcagcctcaatcc |
24889246 |
T |
|
| Q |
254 |
aaacttgcattgtaaatgggcaagtaagaaacatgtgagccagatcctaatcagaagaaacacaactaacacactttatagg |
335 |
Q |
| |
|
||||||| |||| |||||| |||||| | ||| |||||||| ||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
24889245 |
aaacttggattgcaaatggcgaagtaaaagacacgtgagccaaatcttaatcagaagaaacacaactaacacactttgtagg |
24889164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 25984073 - 25983908
Alignment:
| Q |
19 |
gcaagtgtccactcctccaacaaatgatgagttgtatcaactacatgagcaactatttatataacatcatcctacactttgaggtagtggtgcttccaaa |
118 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||| |||||| | | | | |||||||||| |||||||||||| ||||| |||||| | |
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|
| T |
25984073 |
gcaaatgtccactcttccaacaaatgatgagttgtatcaactacttgagcagttgtctctgtaacatcatctcacactttgaggttgtggtacttccata |
25983974 |
T |
|
| Q |
119 |
aactccaaagcaaactagccatacaagcatccagctctggcgtgaaacgttataacaacaaaaaga |
184 |
Q |
| |
|
||||||||| ||| ||| |||| | |||| ||||||| ||||||||||||| ||| |||||||||| |
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|
| T |
25983973 |
aactccaaaacaagctaaccatgcgagcagccagctcaggcgtgaaacgttgtaataacaaaaaga |
25983908 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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