View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15118_low_9 (Length: 344)
Name: NF15118_low_9
Description: NF15118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15118_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 332
Target Start/End: Original strand, 21778815 - 21779127
Alignment:
| Q |
20 |
agcggctctatagcgtcgtagcagaacaaatttctattgatttgcaatacacgatttactacaaagttgtgaaattgcagctaaagtaatgcatagtgtc |
119 |
Q |
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| T |
21778815 |
agcggcactatagcgtcgtagcagaacaaatttctattgttttgcaatacacgatttactacacagttgtgaaattgcagctaaagtaatgcatagtgtc |
21778914 |
T |
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| Q |
120 |
atagtgtagcggaaattgaatggactgctattttccacgatttgcaattgacaaacactgttttcaataaaggaatgaatcatacaaaaatgtatatatt |
219 |
Q |
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| T |
21778915 |
atagtgtagcggaaattgaatggactgctattttccgcgatttgcaattgacaaacactgttttcaataaaggaatgaatcatacaaaaatgtatatatt |
21779014 |
T |
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| Q |
220 |
ttaattgcgggttttcttcatattacatttttgtttttgaatggttattcttcctattacattgcatccattgttgtttaagctagaagttttcattttc |
319 |
Q |
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| T |
21779015 |
ttaatcgcgggttttcttcatattacatttttgtttttgaatggttattcttcctattacattgcatccattgttgtttaagctagaagttttcattttc |
21779114 |
T |
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| Q |
320 |
agatttaaacctt |
332 |
Q |
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| T |
21779115 |
agacttaaacctt |
21779127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 325
Target Start/End: Original strand, 23144960 - 23145018
Alignment:
| Q |
267 |
ttcttcctattacattgcatccattgttgtttaagctagaagttttcattttcagattt |
325 |
Q |
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| T |
23144960 |
ttcttcctattacattgcatccgatgttgtctgagatagaagttttcattttaagattt |
23145018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 327
Target Start/End: Original strand, 23031842 - 23031877
Alignment:
| Q |
292 |
gttgtttaagctagaagttttcattttcagatttaa |
327 |
Q |
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| T |
23031842 |
gttgtttaagctagaagttttcattttcaaatttaa |
23031877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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