View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_108 (Length: 288)
Name: NF1511_high_108
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_108 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 39032660 - 39032912
Alignment:
| Q |
19 |
tatgatgttgaggttaagatcaaaagaaaatcaatgaggtaaaaactgttattatggattagcgtatggcttgttcttgaatgaagttaacaatcttgtt |
118 |
Q |
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| T |
39032660 |
tatgatgttgaggttaagatcaaaagaaaaccgatgaggttaaaagtgttattatggattagcgtatggcttgttcttgaatgaagttaacaatcttgtt |
39032759 |
T |
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| Q |
119 |
aattttaaggataatgctacttctctcgacatattttctagcaaaaagatgacgaccttgttgctagnnnnnnnnattgcaactacaattaatcaactct |
218 |
Q |
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| T |
39032760 |
aattttaaggataatgctacttctcgcgacata-tttctagcaaaaagatgacgaccttgttgctag-tttttttattgcaactac----aatcgactct |
39032853 |
T |
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| Q |
219 |
ttcttttttatccaaccacccatgatgtccaccaatttagatctaacggtgacattctt |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39032854 |
ttcttttttatccaaccacccatgatgtccaccaatttagatctaacggtgacattctt |
39032912 |
T |
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