View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_high_109 (Length: 288)

Name: NF1511_high_109
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_high_109
NF1511_high_109
[»] chr6 (9 HSPs)
chr6 (104-270)||(34851289-34851455)
chr6 (104-252)||(22748588-22748737)
chr6 (104-252)||(16125674-16125823)
chr6 (105-252)||(11014474-11014621)
chr6 (104-203)||(33277355-33277455)
chr6 (145-253)||(16125521-16125629)
chr6 (145-203)||(11014370-11014428)
chr6 (145-203)||(24565296-24565354)
chr6 (105-149)||(24565209-24565253)
[»] chr2 (16 HSPs)
chr2 (104-252)||(12232563-12232711)
chr2 (104-254)||(22563362-22563513)
chr2 (104-252)||(17200078-17200227)
chr2 (104-252)||(29892951-29893098)
chr2 (104-252)||(34645698-34645847)
chr2 (104-252)||(20296568-20296717)
chr2 (104-253)||(21265562-21265711)
chr2 (145-252)||(22563210-22563317)
chr2 (145-252)||(21265756-21265863)
chr2 (155-252)||(4371454-4371551)
chr2 (105-192)||(13979785-13979873)
chr2 (142-193)||(8237903-8237954)
chr2 (145-258)||(34645541-34645653)
chr2 (145-225)||(156975-157054)
chr2 (145-193)||(12232756-12232804)
chr2 (149-225)||(17200276-17200352)
[»] chr8 (17 HSPs)
chr8 (104-252)||(6911029-6911178)
chr8 (104-252)||(16324844-16324993)
chr8 (104-252)||(8489373-8489522)
chr8 (104-235)||(22781072-22781204)
chr8 (150-252)||(15009057-15009159)
chr8 (104-219)||(41403792-41403908)
chr8 (145-252)||(14999171-14999278)
chr8 (145-252)||(43801665-43801772)
chr8 (104-252)||(43801470-43801620)
chr8 (105-252)||(14999324-14999476)
chr8 (104-252)||(41721828-41721976)
chr8 (145-220)||(6911223-6911298)
chr8 (145-252)||(41722021-41722128)
chr8 (145-220)||(40621721-40621796)
chr8 (145-220)||(16325038-16325115)
chr8 (137-202)||(24829904-24829969)
chr8 (145-252)||(41403953-41404061)
[»] chr5 (15 HSPs)
chr5 (104-252)||(17370067-17370216)
chr5 (104-253)||(31194117-31194267)
chr5 (104-253)||(32347049-32347199)
chr5 (104-252)||(39634955-39635102)
chr5 (104-220)||(42546501-42546618)
chr5 (144-252)||(31193965-31194073)
chr5 (104-202)||(304062-304160)
chr5 (145-252)||(14076863-14076970)
chr5 (137-252)||(36955303-36955417)
chr5 (129-253)||(8754657-8754782)
chr5 (105-174)||(14076746-14076816)
chr5 (145-240)||(36955488-36955583)
chr5 (145-216)||(42546385-42546456)
chr5 (145-203)||(39634853-39634910)
chr5 (145-225)||(31750926-31751006)
[»] chr7 (16 HSPs)
chr7 (104-252)||(35207178-35207327)
chr7 (104-253)||(19318146-19318296)
chr7 (104-241)||(29474565-29474702)
chr7 (148-252)||(19318345-19318449)
chr7 (104-199)||(26903580-26903676)
chr7 (105-194)||(35363471-35363561)
chr7 (104-251)||(3740644-3740792)
chr7 (104-179)||(48006197-48006273)
chr7 (145-252)||(35363318-35363425)
chr7 (140-253)||(2834388-2834501)
chr7 (104-166)||(2834287-2834350)
chr7 (145-203)||(6408448-6408506)
chr7 (175-252)||(35207399-35207476)
chr7 (108-179)||(6408327-6408399)
chr7 (145-252)||(25048217-25048325)
chr7 (145-220)||(48006318-48006393)
[»] chr4 (25 HSPs)
chr4 (107-253)||(50544255-50544402)
chr4 (111-242)||(3556376-3556507)
chr4 (145-252)||(24673915-24674022)
chr4 (104-252)||(9551376-9551526)
chr4 (107-253)||(7061971-7062118)
chr4 (145-250)||(5465855-5465960)
chr4 (104-203)||(11790014-11790114)
chr4 (145-253)||(17914942-17915050)
chr4 (113-235)||(1025067-1025190)
chr4 (105-203)||(26297363-26297461)
chr4 (104-219)||(5466005-5466117)
chr4 (107-252)||(21785861-21785999)
chr4 (145-253)||(11789858-11789966)
chr4 (116-243)||(46993076-46993204)
chr4 (152-235)||(42475893-42475976)
chr4 (104-223)||(19037874-19037992)
chr4 (104-219)||(32591300-32591417)
chr4 (137-203)||(17914762-17914829)
chr4 (104-193)||(23655126-23655215)
chr4 (145-210)||(26297507-26297572)
chr4 (145-202)||(9551274-9551331)
chr4 (145-249)||(23655261-23655366)
chr4 (172-252)||(54316050-54316130)
chr4 (145-219)||(51959693-51959768)
chr4 (153-203)||(3556567-3556617)
[»] chr3 (20 HSPs)
chr3 (104-252)||(38499970-38500122)
chr3 (104-244)||(43797360-43797501)
chr3 (104-252)||(8799317-8799465)
chr3 (145-251)||(4041377-4041483)
chr3 (114-243)||(53197147-53197275)
chr3 (115-203)||(46883464-46883553)
chr3 (144-252)||(38499819-38499926)
chr3 (145-252)||(53196988-53197095)
chr3 (105-219)||(43797796-43797909)
chr3 (104-203)||(29828725-29828826)
chr3 (107-203)||(4041231-4041329)
chr3 (104-252)||(48346130-48346280)
chr3 (145-244)||(29828875-29828974)
chr3 (145-220)||(46883606-46883681)
chr3 (145-225)||(25349904-25349984)
chr3 (144-243)||(43797545-43797644)
chr3 (145-203)||(43797692-43797750)
chr3 (145-220)||(8799510-8799585)
chr3 (145-215)||(20383229-20383299)
chr3 (106-142)||(20383143-20383179)
[»] chr1 (24 HSPs)
chr1 (104-253)||(24882970-24883118)
chr1 (104-243)||(5771917-5772057)
chr1 (104-250)||(34969987-34970134)
chr1 (113-243)||(49776984-49777115)
chr1 (104-203)||(27171951-27172051)
chr1 (104-252)||(3385308-3385460)
chr1 (145-251)||(27171800-27171906)
chr1 (104-242)||(33400865-33401006)
chr1 (104-252)||(33156456-33156604)
chr1 (104-203)||(38338716-38338816)
chr1 (145-252)||(3385505-3385612)
chr1 (145-252)||(24883162-24883269)
chr1 (145-243)||(33156649-33156746)
chr1 (104-201)||(37948940-37949038)
chr1 (145-245)||(37948795-37948895)
chr1 (104-220)||(13947074-13947191)
chr1 (104-179)||(42082968-42083044)
chr1 (145-203)||(13946971-13947029)
chr1 (145-203)||(38338861-38338919)
chr1 (145-220)||(34970179-34970254)
chr1 (105-179)||(39781217-39781291)
chr1 (146-253)||(49776818-49776925)
chr1 (145-251)||(33401051-33401156)
chr1 (145-202)||(43297045-43297102)


Alignment Details
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 104 - 270
Target Start/End: Complemental strand, 34851455 - 34851289
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgtttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaac 203  Q
    |||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |||||    
T  34851455 catgttcccttcttctctcatattgcaacagccttttattatttttaatttaaaatctaaacttttagatatttttttaccacatgtcttatattcaaac 34851356  T
Q  204 tccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactcgcaagcctagacgcctac 270  Q
    |||||||||||||||||||| |||  |||||||||||||||||||||||| |  |||||||||||||    
T  34851355 tccaaatagagtaaatgaagttgaatctaaattgagcatatccgaactcgtattcctagacgcctac 34851289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 22748737 - 22748588
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgt-ttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    ||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||  || ||||||||| |||||||||||||  |||||||    
T  22748737 catgttcccttcttctctcatatggcaacaaccttttattgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaa 22748638  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
        |||| ||||||||| |||  ||||||||||||||||| ||||||||    
T  22748637 tcttaaatggagtaaatggagcatagcctaaattgagcatacccgaactc 22748588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 104 - 252
Target Start/End: Original strand, 16125674 - 16125823
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgtttt-taatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||| | ||||||||||||||  ||||||| |||||||||||| ||||||||||||||| || ||||||||| || || ||||| ||||  ||||||     
T  16125674 catgtttcattcttctctcatatcacaacaaccttttattgttttttaatttaaaatctcatctgttagatattattttgtcacatatcttgcatccaag 16125773  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
    ||| |||| ||||||||| |||| || |||||| ||||||||||||||||    
T  16125774 ctctaaattgagtaaatggagcttagtctaaatagagcatatccgaactc 16125823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 11014474 - 11014621
Alignment:
Q  105 atgttcccttcttctctcatattgcaacaacattttatt-gtttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaac 203  Q
    |||||||||||||||||||||| |||||||| |||||||  ||||||||||||||| |||||  ||| |||||||| || ||||| ||||  || |||||    
T  11014474 atgttcccttcttctctcatatcgcaacaaccttttattattttttaatttaaaatttcaaccgttaaatatttttttgtcacatatcttgcattcaaac 11014573  T
Q  204 tccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
       ||||||| |||||| || | ||||||||| ||||||| ||||||||    
T  11014574 attaaatagaataaatggagtttagcctaaatggagcata-ccgaactc 11014621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 203
Target Start/End: Complemental strand, 33277455 - 33277355
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||||| |||||||||||||| |||||||| || |||| ||||| ||||||||||||||||  ||| |||||||| |||||||||||||  |||||||    
T  33277455 catgttccattcttctctcatatcgcaacaactttatattattttttaatttaaaatctcaaccattaaatatttttttgccacatgtcttgcatccaaa 33277356  T
Q  203 c 203  Q
    |    
T  33277355 c 33277355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 16125629 - 16125521
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    ||||||||||||||| ||||   ||| |||||||| |||||||||||||  |||||||| | ||||  | ||||||||| | ||||||||| |||||||     
T  16125629 tttttaatttaaaatttcaatcgttaaatatttttttgccacatgtcttgcatccaaaccctaaatgaaataaatgaagtttagcctaaatggagcatac 16125530  T
Q  245 ccgaactcg 253  Q
    |||||||||    
T  16125529 ccgaactcg 16125521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 11014428 - 11014370
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaac 203  Q
    |||||||||||||||||||||| ||| |||||||| |  ||||||||||| ||||||||    
T  11014428 tttttaatttaaaatctcaactgttaaatatttttttatcacatgtcttacatccaaac 11014370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 24565296 - 24565354
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaac 203  Q
    |||||||||||||||||||||  |||||| ||||| |||||||||||||| ||| ||||    
T  24565296 tttttaatttaaaatctcaaccgttagatgtttttttgccacatgtcttacatctaaac 24565354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 24565253 - 24565209
Alignment:
Q  105 atgttcccttcttctctcatattgcaacaacattttattgttttt 149  Q
    |||||||||||||||||||| | |||||||| ||||||| |||||    
T  24565253 atgttcccttcttctctcatttcgcaacaaccttttattattttt 24565209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 12232711 - 12232563
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    ||||||||||||||||||||| | |||||||| ||||||||||||| ||||||||||||||||  |||||||||||| |||||||||||||| |||||||    
T  12232711 catgttcccttcttctctcatgtcgcaacaaccttttattgttttttaatttaaaatctcaaccgttagatattttt-tgccacatgtcttacatccaaa 12232613  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
    | | |||||||||||||| |||| ||||||||| |||||||||| |||||    
T  12232612 ccctaaatagagtaaatggagcttagcctaaatggagcatatccaaactc 12232563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 104 - 254
Target Start/End: Original strand, 22563362 - 22563513
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgtttt-taatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||||||||||||||||| || |||||||| |||||||||||| |||||||||||||||||  |||||||||||| |||||||||||||  |||||||    
T  22563362 catgttcccttcttctctcacatcgcaacaaccttttattgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaa 22563461  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactcgc 254  Q
      | |||| ||||||||| || | ||||||||| ||||||| ||||||||||    
T  22563462 tcctaaatggagtaaatggagtttagcctaaatggagcatacccgaactcgc 22563513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 17200227 - 17200078
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||| ||||||||||||||||  |||||||||| | |||||||||||||| |||||||    
T  17200227 catgttcccttcttctctcatatcacaacaaccttttattgttttttaatttaaaatctcaaccattagatatttatttgccacatgtcttacatccaaa 17200128  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
      | |||| ||||||||| ||||  |||||||| ||||||| ||||||||    
T  17200127 tcctaaatggagtaaatggagctttgcctaaatggagcatacccgaactc 17200078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 104 - 252
Target Start/End: Original strand, 29892951 - 29893098
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattg-tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    ||||||||||||||||||||||| |||||||  |||||||| |||||||||||||||||||||  |||||||||||  || ||||||||||  |||||||    
T  29892951 catgttcccttcttctctcatatcgcaacaatcttttattgttttttaatttaaaatctcaaccgttagatatttt--tgtcacatgtcttgcatccaaa 29893048  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
    | | |||||||||||||  |||| ||||||||| ||||||| ||||||||    
T  29893049 ccctaaatagagtaaatagagcttagcctaaatggagcatacccgaactc 29893098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 252
Target Start/End: Original strand, 34645698 - 34645847
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgtttt-taatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    ||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||  |||||||||||  |||||||||||||| |||||||    
T  34645698 catgttcccttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaaccgttagatattttcttgccacatgtcttacatccaaa 34645797  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
    | | |||| || |||||| || | ||||||||| ||  ||| ||||||||    
T  34645798 ccctaaatggaataaatggagttaagcctaaatggaatatacccgaactc 34645847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 104 - 252
Target Start/End: Original strand, 20296568 - 20296717
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgtttt-taatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||||||||||||||||||||  ||||||| |||||||||||| |||||||||||||||||  || ||||||||| |||||||||||||| ||||||     
T  20296568 catgttcccttcttctctcatatgacaacaaccttttattgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttacatccaat 20296667  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
        |||| ||||||||| |||| ||||||||| ||||||| || |||||    
T  20296668 tcttaaatggagtaaatggagcttagcctaaatagagcatacccaaactc 20296717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 253
Target Start/End: Complemental strand, 21265711 - 21265562
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgt-ttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    ||||||| ||||||||||||||| |||| ||| ||||||||| ||||||||||||||||||||  |||||||||||| |||||||||||||  |||||||    
T  21265711 catgttctcttcttctctcatatcgcaataacgttttattgttttttaatttaaaatctcaaccgttagatattttt-tgccacatgtcttgcatccaaa 21265613  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactcg 253  Q
    | | |||| ||||||||  |||| || |||||| ||||||| || ||||||    
T  21265612 ccctaaatggagtaaattgagcttagtctaaatggagcataccctaactcg 21265562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 252
Target Start/End: Complemental strand, 22563317 - 22563210
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    |||||||||||||||||||||  ||| |||||||| |||||||||||||  |||||||| | |||| ||||||||| |||| ||||||||| |||||||     
T  22563317 tttttaatttaaaatctcaaccgttaaatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatac 22563218  T
Q  245 ccgaactc 252  Q
    ||||||||    
T  22563217 ccgaactc 22563210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 21265756 - 21265863
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    |||||||||||||||||||||  ||||||| |||| |||||||||||||  |||||||| | |||||||||||||| |||| ||| ||||| |||||||     
T  21265756 tttttaatttaaaatctcaaccattagatacttttttgccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcttaaatagagcatac 21265855  T
Q  245 ccgaactc 252  Q
     |||||||    
T  21265856 tcgaactc 21265863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 252
Target Start/End: Complemental strand, 4371551 - 4371454
Alignment:
Q  155 aaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
    |||||||||||  |||||||||||| |||||||||||||  |||||||| | |||| ||||||||| |||| ||||||||| ||||||| ||||||||    
T  4371551 aaaatctcaaccattagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 4371454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 13979785 - 13979873
Alignment:
Q  105 atgttcccttcttctctcatattgcaacaacattttattg-tttttaatttaaaatctcaacttttagatatttttctgccacatgtct 192  Q
    |||||| ||||||||||| ||| |||||||||||| |||| ||||||||||||||||||||   |||||||||||| ||||| ||||||    
T  13979785 atgttctcttcttctctcctatcgcaacaacatttcattgttttttaatttaaaatctcaatcgttagatatttttttgccatatgtct 13979873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 8237954 - 8237903
Alignment:
Q  142 ttgtttttaatttaaaatctcaacttttagatatttttctgccacatgtctt 193  Q
    ||||||||||||||||||||||||| ||||||| |||| |||||||||||||    
T  8237954 ttgtttttaatttaaaatctcaactattagatacttttttgccacatgtctt 8237903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 258
Target Start/End: Complemental strand, 34645653 - 34645541
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||||  ||||| || | |||| ||||||||  | || | ||||||| |||||||     
T  34645653 tttttaatttaaaatctcaatcgttagatattttt-tgccacatgtcttgcatccataccctaaatggagtaaatagaacttaacctaaatagagcatac 34645555  T
Q  245 ccgaactcgcaagc 258  Q
    ||||||||| ||||    
T  34645554 ccgaactcgaaagc 34645541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 157054 - 156975
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagct 225  Q
    |||||||||| ||||||||||  |||||||||||||||||| |||||||| |||||||  | |||| ||||||||| ||||    
T  157054 tttttaatttcaaatctcaaccgttagatatttttctgcca-atgtcttacatccaaatcctaaatggagtaaatggagct 156975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 12232756 - 12232804
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtctt 193  Q
    |||||||||||| |||||| || |||||||||||| |||||||||||||    
T  12232756 tttttaatttaatatctcacctgttagatatttttttgccacatgtctt 12232804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 17200276 - 17200352
Alignment:
Q  149 taatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagct 225  Q
    ||||||||||| ||||   |||||||||||| |||||||||||||| ||||||||   |||| ||||||||| ||||    
T  17200276 taatttaaaatatcaatcgttagatatttttttgccacatgtcttacatccaaaccttaaatggagtaaatggagct 17200352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 6911178 - 6911029
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||   |||||||||||| |||||||||||||| |||||||    
T  6911178 catgttcccttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaatcgttagatatttttttgccacatgtcttacatccaaa 6911079  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
    | | |||| ||||||||| |||| ||||||||| ||||||| | ||||||    
T  6911078 ccctaaatggagtaaatggagcttagcctaaatggagcatacctgaactc 6911029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 16324993 - 16324844
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||  |||||||||||| || ||||||||||  |||||||    
T  16324993 catgttcccttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaaccgttagatatttttttgtcacatgtcttgcatccaaa 16324894  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
    | | |||| || |||||  |||| ||||||||| ||||||  ||||||||    
T  16324893 ccctaaatggattaaattgagcttagcctaaatggagcatgcccgaactc 16324844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 8489522 - 8489373
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||||||||||| || ||||| | |||||| ||||||||||||| |||||||||||||||   |||||||||||| |||||||||||||| |||||||    
T  8489522 catgttcccttcttttcccatatcggaacaaccttttattgttttttaatttaaaatctcaatcgttagatatttttttgccacatgtcttacatccaaa 8489423  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
    | | |||| || ||||||||||| | ||||||| ||||||| || |||||    
T  8489422 ccctaaatggaataaatgaagcttaacctaaatggagcatacccaaactc 8489373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 235
Target Start/End: Complemental strand, 22781204 - 22781072
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||||||||||||| |||||| |||||||| |||| |||||||| ||||||||||||||||| |||||||| ||| ||||||||| |||  |||||||    
T  22781204 catgttcccttcttctttcatatcgcaacaaccttttgttgttttttaatttaaaatctcaactgttagatatctttttgccacatgccttgcatccaaa 22781105  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaat 235  Q
    | |  ||| |||||||||||| | |||||||||    
T  22781104 ccctgaatggagtaaatgaagtttagcctaaat 22781072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 15009057 - 15009159
Alignment:
Q  150 aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatatccgaa 249  Q
    |||||||||||| |||| ||||||| |||| |||||||||||||| |||||||| | |||| |||||||||||||| ||||||||| ||||||| |||||    
T  15009057 aatttaaaatcttaactgttagatacttttttgccacatgtcttacatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccgaa 15009156  T
Q  250 ctc 252  Q
    |||    
T  15009157 ctc 15009159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 41403908 - 41403792
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||| |||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||||| || ||||| ||||| ||| |||    
T  41403908 catgtttccttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaactgttagatatttttttgtcacatatcttacatcaaaa 41403809  T
Q  203 ctccaaatagagtaaat 219  Q
      | |||| ||||||||    
T  41403808 tcctaaatggagtaaat 41403792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 252
Target Start/End: Complemental strand, 14999278 - 14999171
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    |||||||||||||||||||||| ||||||| |||  |||||||||||||  |||||||| | |||| ||||||||  |||| ||||||||| ||||||||    
T  14999278 tttttaatttaaaatctcaactattagatactttattgccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagcctaaatggagcatat 14999179  T
Q  245 ccgaactc 252  Q
    ||||||||    
T  14999178 ccgaactc 14999171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 43801665 - 43801772
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    ||||||||||||||| |||||| |||||||||||| |||||||| ||||  |||||||||| |||| ||||||||| |||| ||||||||| || ||||     
T  43801665 tttttaatttaaaatttcaactgttagatatttttttgccacatatcttgcatccaaactctaaatggagtaaatggagcttagcctaaatggaacatac 43801764  T
Q  245 ccgaactc 252  Q
    ||||||||    
T  43801765 ccgaactc 43801772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 43801620 - 43801470
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttct-gccacatgtcttatatccaa 201  Q
    |||||| | ||||||| ||||||  ||||||| ||||||| ||||| ||||||||||||||||  ||| || ||||| | ||||||||||||| ||||||    
T  43801620 catgtttctttcttctttcatatcccaacaaccttttattattttttaatttaaaatctcaaccgttatattttttttttgccacatgtcttacatccaa 43801521  T
Q  202 actccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
    |||| |||| |||||||||||| | |||||||||  |||||| ||||||||    
T  43801520 actctaaatggagtaaatgaagtttagcctaaatgaagcatacccgaactc 43801470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 14999324 - 14999476
Alignment:
Q  105 atgttcccttcttctctcatattgcaacaacattttattg-tttttaatttaaaatctcaacttttagatatttttctgccacatgtctt--at--atcc 199  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||| |||| ||| ||| |||| || ||||||| ||  ||  ||||    
T  14999324 atgttcccttcttctctcatattgcaacaatcttttattgctttttaatttaaaatcttaactgttatatacttttttgtcacatgttttgcatccatcc 14999423  T
Q  200 aaactccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
    |||  | ||||  |||||||| |||| | ||||||| ||||||||||||||||    
T  14999424 aaatcctaaatgaagtaaatgtagcttaacctaaatggagcatatccgaactc 14999476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 41721976 - 41721828
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttatt-gtttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||||||||||||||||||||  |||||||||||| ||  |||||||||||||||||||||  |||||| ||||| |||||||||||  | |||||||    
T  41721976 catgttcccttcttctctcatatcacaacaacattttcttattttttaatttaaaatctcaaccgttagat-tttttttgccacatgtcaaaaatccaaa 41721878  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
        ||||  |||||||| |||| |  |||||| ||||||||||||||||    
T  41721877 tcttaaatgaagtaaatggagcttaatctaaatcgagcatatccgaactc 41721828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 6911223 - 6911298
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatg 220  Q
    |||||||||||||||||||||  || ||||||||| |||||||||||||  |||||||| | |||| |||||||||    
T  6911223 tttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatg 6911298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 41722021 - 41722128
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    ||||| ||||||||||| |||  |||||||||||| ||| |||||||||  |||||| ||| ||||| |||||||  |||| |||||||||  | ||||     
T  41722021 ttttttatttaaaatcttaaccgttagatatttttttgcaacatgtcttgcatccaagctctaaataaagtaaatagagcttagcctaaatgaaacatac 41722120  T
Q  245 ccgaactc 252  Q
    ||||||||    
T  41722121 ccgaactc 41722128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 40621721 - 40621796
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatg 220  Q
    |||||||||||||||||||||  |||||||||||| | |||||||| ||| || ||||| | ||||  ||||||||    
T  40621721 tttttaatttaaaatctcaaccgttagatatttttttaccacatgttttacattcaaaccctaaatgaagtaaatg 40621796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 16325038 - 16325115
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgcc--acatgtcttatatccaaactccaaatagagtaaatg 220  Q
    |||||||||||||||||||||  |||||||||||| | ||  |||||||||  |||||||| | |||| |||||||||    
T  16325038 tttttaatttaaaatctcaaccgttagatatttttttaccatacatgtcttgcatccaaaccctaaatggagtaaatg 16325115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 24829904 - 24829969
Alignment:
Q  137 ttttattgtttt-taatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||||||||| |||||||||||||||||  ||| |||||||| |||||||||| ||| |||||||    
T  24829904 ttttattgttttttaatttaaaatctcaacccttacatattttt-tgccacatgttttacatccaaa 24829969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 41403953 - 41404061
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttt-tctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcata 243  Q
    |||| ||||||||||||||||  ||| ||||||| | || ||||||||||  |||||||| | |||||||||||||  | || | ||||||| |||||||    
T  41403953 ttttaaatttaaaatctcaaccgttaaatattttgtttgtcacatgtcttgcatccaaaccctaaatagagtaaattgaacttaacctaaatggagcata 41404052  T
Q  244 tccgaactc 252  Q
     || |||||    
T  41404053 cccaaactc 41404061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 9e-39; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 17370216 - 17370067
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||  |||||||||||| |||||||||||||  |||||||    
T  17370216 catgttcccttcttctctcatattgcaacaaccttttattgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaa 17370117  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
    | | |||| ||||||||| || | ||| ||||| ||||||| ||||||||    
T  17370116 ccctaaatggagtaaatggagtttagcataaatggagcatacccgaactc 17370067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 104 - 253
Target Start/End: Original strand, 31194117 - 31194267
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgtttt-taatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    ||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||  || ||||||||| |||||||||||||  |||||||    
T  31194117 catgttcccttcttctctcatatggcaacaaccttttattgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaa 31194216  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactcg 253  Q
    |   |||| ||||||||| |||| ||||||||| ||||||| |||||||||    
T  31194217 ccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactcg 31194267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 104 - 253
Target Start/End: Original strand, 32347049 - 32347199
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgtttt-taatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    ||||||||||||||||||||||| |||||||  |||||||||||| |||||||| |||| |||  |||||||||||| || ||||||||||| |||||||    
T  32347049 catgttcccttcttctctcatatcgcaacaatcttttattgttttttaatttaagatctaaacagttagatatttttttgtcacatgtcttacatccaaa 32347148  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactcg 253  Q
    |   |||| |||||| || |||| ||||||||| ||||||||| |||||||    
T  32347149 ccttaaatggagtaattggagcttagcctaaatggagcatatctgaactcg 32347199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 104 - 252
Target Start/End: Original strand, 39634955 - 39635102
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattg-tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    ||||||| ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||  ||| |||||||| |||| ||| ||||| |||||||    
T  39634955 catgttctcttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaaccgttacatatttttttgccgcatatcttacatccaaa 39635054  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
    | | |||| ||||| |||||||| ||||||||| ||||||| ||||||||    
T  39635055 ccctaaat-gagtatatgaagcttagcctaaatagagcata-ccgaactc 39635102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 220
Target Start/End: Original strand, 42546501 - 42546618
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgtttt-taatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||||  |||||| ||||| || ||||||||||  |||||||    
T  42546501 catgttccattcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaaccgttagatgtttttttgtcacatgtcttgcatccaaa 42546600  T
Q  203 ctccaaatagagtaaatg 220  Q
    | | |||| |||||||||    
T  42546601 ccctaaatggagtaaatg 42546618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 252
Target Start/End: Complemental strand, 31194073 - 31193965
Alignment:
Q  144 gtttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcata 243  Q
    ||||||||||||||||||||||  || ||||||||| |||||||||||||  ||||||||   |||| ||||||||| |||| ||||||||| |||||||    
T  31194073 gtttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcata 31193974  T
Q  244 tccgaactc 252  Q
     ||||||||    
T  31193973 cccgaactc 31193965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 104 - 202
Target Start/End: Complemental strand, 304160 - 304062
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||||||||||||||||||||| ||||||  ||||||||||||| ||||||||||||||||  ||| |||||||| || ||||||||||| |||||||    
T  304160 catgttcccttcttctctcatattacaacaatcttttattgtttttaaatttaaaatctcaaccgttatatattttt-tgtcacatgtcttacatccaaa 304062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 14076863 - 14076970
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    |||||||||||||||||||||  ||| |||||||| |||||||||||||  |||||||| | |||| ||||||||  | || ||||||||| ||||||||    
T  14076863 tttttaatttaaaatctcaaccgttaaatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatagaacttagcctaaatggagcatat 14076962  T
Q  245 ccgaactc 252  Q
    ||||||||    
T  14076963 ccgaactc 14076970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 137 - 252
Target Start/End: Complemental strand, 36955417 - 36955303
Alignment:
Q  137 ttttattgtttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaatt 236  Q
    |||||||||||||||||||||||||||| | ||| || ||||| || ||||||||||  |||||||| | |||| |||||||||||||| |||||||||     
T  36955417 ttttattgtttttaatttaaaatctcaaatgtta-atttttttttgtcacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatg 36955319  T
Q  237 gagcatatccgaactc 252  Q
    |||| || ||||||||    
T  36955318 gagcctacccgaactc 36955303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 253
Target Start/End: Complemental strand, 8754782 - 8754657
Alignment:
Q  129 caacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctga 227  Q
    ||||||| ||||||||||||| |||||||||| |||||  |||||| ||||| |||||||||||||  |||||||| | |||||||||||||| || | |    
T  8754782 caacaaccttttattgttttttaatttaaaatttcaaccgttagatctttttttgccacatgtcttccatccaaaccctaaatagagtaaatggagttta 8754683  T
Q  228 gcctaaattgagcatatccgaactcg 253  Q
    | |||||| ||| ||| |||||||||    
T  8754682 gtctaaatggaggatacccgaactcg 8754657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 14076816 - 14076746
Alignment:
Q  105 atgttcccttcttctctcatattgcaacaacattttattgt-ttttaatttaaaatctcaacttttagata 174  Q
    |||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||  |||||||    
T  14076816 atgttcccttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaaccattagata 14076746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 36955488 - 36955583
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagc 240  Q
    |||||||||||||||| ||||  |||||||||||| |||||||||||||  | |||||| | |||||||||||||  |||| ||||||||| ||||    
T  36955488 tttttaatttaaaatcgcaaccgttagatatttttttgccacatgtcttgcaaccaaaccctaaatagagtaaatagagcttagcctaaatggagc 36955583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 42546456 - 42546385
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagta 216  Q
    |||||||||||||||||||||  |||||||||||| ||||| |||||||  |||||||| | |||| |||||    
T  42546456 tttttaatttaaaatctcaaccgttagatatttttttgccaaatgtcttgcatccaaaccctaaatggagta 42546385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 39634910 - 39634853
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaac 203  Q
    |||||||||||||||||||||  |||||| ||||| |||||||||||||| ||||||||    
T  39634910 tttttaatttaaaatctcaaccgttagat-tttttttgccacatgtcttacatccaaac 39634853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 31750926 - 31751006
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagct 225  Q
    ||||||||||||||||||||   |||||||||||| |||||| ||||||  || | ||||  ||||||||||||| |||||    
T  31750926 tttttaatttaaaatctcaatcattagatatttttttgccacttgtcttgcattcgaactttaaatagagtaaataaagct 31751006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 35207327 - 35207178
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||  |||||||||||| |||||||||||||  |||||||    
T  35207327 catgttcccttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaa 35207228  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
    | | |||| ||||||||| |||| ||||||||| ||  ||| ||||||||    
T  35207227 ccctaaatggagtaaatggagcttagcctaaatggaatatacccgaactc 35207178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 104 - 253
Target Start/End: Complemental strand, 19318296 - 19318146
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||||| |||||||||||||| |||||||| ||||||||||||| |||||||||||||||   |||||||||||| || ||||||||||| |||||||    
T  19318296 catgttcctttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaatcgttagatatttttttgtcacatgtcttacatccaaa 19318197  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactcg 253  Q
    ||| |||| |||||||||  ||| | ||||||| ||||||| || ||||||    
T  19318196 ctctaaatggagtaaatggcgcttaacctaaatggagcatacccaaactcg 19318146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 104 - 241
Target Start/End: Original strand, 29474565 - 29474702
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattg-tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||||||||||||| ||||||  ||||||| |||||||| ||||||||||||||| |||||  |||||||||||| | | |||||||||  ||||||     
T  29474565 catgttcccttcttctgtcatatcacaacaaccttttattgttttttaatttaaaatttcaaccgttagatattttt-ttctacatgtcttgcatccaag 29474663  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagca 241  Q
    ||| |||||||||||||| || | ||||||||| |||||    
T  29474664 ctctaaatagagtaaatggagtttagcctaaatggagca 29474702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 252
Target Start/End: Original strand, 19318345 - 19318449
Alignment:
Q  148 ttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatatccg 247  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||  ||| ||||   |||| |||||||||||||| ||||||||| ||||||| |||    
T  19318345 ttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatctaaaccttaaatggagtaaatgaagcttagcctaaatggagcatacccg 19318444  T
Q  248 aactc 252  Q
    |||||    
T  19318445 aactc 19318449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 26903580 - 26903676
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgtttt-taatttaaaatctcaacttttagatatttttctgccacatgtcttatatcc 199  Q
    ||||||| ||||||||||||||| |||||||| ||||||| |||| |||||||||||||||||  |||||||||||| || ||||||||||| ||||    
T  26903580 catgttctcttcttctctcatatcgcaacaactttttattattttttaatttaaaatctcaaccgttagatatttttttgtcacatgtcttacatcc 26903676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 35363471 - 35363561
Alignment:
Q  105 atgttcccttcttctctcatattgcaacaacattttattgtttt-taatttaaaatctcaacttttagatatttttctgccacatgtctta 194  Q
    |||||||||| ||||||||||| ||||||||||| |||| |||| |||||||||||||||||  |||||||||||| |||||||| |||||    
T  35363471 atgttccctttttctctcatatcgcaacaacattctattattttttaatttaaaatctcaaccattagatatttttttgccacatatctta 35363561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 251
Target Start/End: Complemental strand, 3740792 - 3740644
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgt-ttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||||||||||||||||||||   |||||||||||||||| |||||||||||||||| ||   ||| |||| ||| |||| ||| ||||| |||||||    
T  3740792 catgttcccttcttctctcatatcttaacaacattttattgttttttaatttaaaatctgaatcgttaaatatctttttgccgcatatcttacatccaaa 3740693  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaact 251  Q
    |   |||| || ||||| ||| | | ||||||||||||||| |||||||    
T  3740692 ccttaaatggaataaataaagtttaacctaaattgagcatacccgaact 3740644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 48006273 - 48006197
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgt-ttttaatttaaaatctcaacttttagatattttt 179  Q
    |||||||||||||| |||||||| |||||||| ||||||||| ||||||||||||||||||||  ||||||||||||    
T  48006273 catgttcccttcttttctcatatcgcaacaactttttattgttttttaatttaaaatctcaaccgttagatattttt 48006197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 252
Target Start/End: Complemental strand, 35363425 - 35363318
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    |||||||||||||||||||||  ||| || ||||| |||||||||| ||  ||| |||||| |||| ||||||||||| || ||||||||| |||||||     
T  35363425 tttttaatttaaaatctcaaccgttatatttttttttgccacatgtgttgcatctaaactctaaatggagtaaatgaaacttagcctaaatggagcatac 35363326  T
Q  245 ccgaactc 252  Q
    ||||||||    
T  35363325 ccgaactc 35363318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 253
Target Start/End: Original strand, 2834388 - 2834501
Alignment:
Q  140 tattgtttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgag 239  Q
    |||| |||||||||||||||||||||| ||| ||||| || |||||||||| || ||||||||| | |||| || |||||| | || ||||||||| |||    
T  2834388 tattttttttaatttaaaatctcaactgttacatattattttgccacatgttttgtatccaaaccctaaatggaataaatggaacttagcctaaatggag 2834487  T
Q  240 catatccgaactcg 253  Q
    |||| || ||||||    
T  2834488 catacccaaactcg 2834501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 2834350 - 2834287
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgt-ttttaatttaaaatctcaact 166  Q
    |||||| ||||||||||||||||  ||||||| ||||||||| |||||||||||||||||||||    
T  2834350 catgtttccttcttctctcatatcacaacaaccttttattgttttttaatttaaaatctcaact 2834287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 6408448 - 6408506
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaac 203  Q
    |||||||||||||||||||||  |||||||||||| |||||||||||||  ||||||||    
T  6408448 tttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaac 6408506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 35207399 - 35207476
Alignment:
Q  175 tttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
    ||||| |||||||||||||  |||||||| | |||| ||||||||| || | ||||||||| ||||||||||||||||    
T  35207399 tttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcctaaatggagcatatccgaactc 35207476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 179
Target Start/End: Complemental strand, 6408399 - 6408327
Alignment:
Q  108 ttcccttcttctctcatattgcaacaacattttattgt-ttttaatttaaaatctcaacttttagatattttt 179  Q
    ||||||||||||||||||| ||| |||| ||||||||| ||||||| ||||||||||||  ||| ||||||||    
T  6408399 ttcccttcttctctcatatggcagcaaccttttattgttttttaatataaaatctcaaccgttacatattttt 6408327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 25048217 - 25048325
Alignment:
Q  145 tttttaatttaaaatctcaa-cttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcata 243  Q
    |||||||||||||||||||| | |||  |||||||| || ||||||||||  |||||||  | ||||  |||||||| |||| ||||||||| |||||||    
T  25048217 tttttaatttaaaatctcaaccgtttgaatatttttttgtcacatgtcttgcatccaaatcctaaatgaagtaaatggagcttagcctaaatggagcata 25048316  T
Q  244 tccgaactc 252  Q
     ||||||||    
T  25048317 cccgaactc 25048325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 48006318 - 48006393
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatg 220  Q
    |||||||||||||||||||||  ||| |||||||| |||||||||| ||  |||||||  | ||||||||||||||    
T  48006318 tttttaatttaaaatctcaaccgttaaatatttttttgccacatgttttgcatccaaatcctaaatagagtaaatg 48006393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 107 - 253
Target Start/End: Complemental strand, 50544402 - 50544255
Alignment:
Q  107 gttcccttcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactc 205  Q
    |||||||||||||||||||| |||||||| ||||||| ||||| |||||||||||||| |  |||||||| ||| |||||||||||||  |||||||| |    
T  50544402 gttcccttcttctctcatatcgcaacaaccttttattattttttaatttaaaatctcatccgttagatatctttttgccacatgtcttgcatccaaaccc 50544303  T
Q  206 caaatagagtaaatgaagctgagcctaaattgagcatatccgaactcg 253  Q
     ||||||| |||||| |||| ||||||||| |||||||||||||||||    
T  50544302 taaatagaataaatggagcttagcctaaatggagcatatccgaactcg 50544255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 3556507 - 3556376
Alignment:
Q  111 ccttcttctctcatattgcaacaacattttattgtttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaat 210  Q
    |||||||||||||||| |||||||| |||||||||||||||| ||||||||||||  |||||||||||| ||| |||||||||  ||||||||   ||||    
T  3556507 ccttcttctctcatatcgcaacaaccttttattgtttttaatataaaatctcaacccttagatatttttttgcaacatgtcttgcatccaaaccttaaat 3556408  T
Q  211 agagtaaatgaagctgagcctaaattgagcat 242  Q
     |||||||||||| | ||| ||||| ||||||    
T  3556407 ggagtaaatgaagtttagcttaaatggagcat 3556376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 24673915 - 24674022
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    ||||||||||||||||||||   |||||||||||| || || |||||||| |||||||||| ||||||||||||||||| | ||||||||| ||||||||    
T  24673915 tttttaatttaaaatctcaatcgttagatatttttttgtcatatgtcttacatccaaactctaaatagagtaaatgaagtttagcctaaatggagcatat 24674014  T
Q  245 ccgaactc 252  Q
    ||||||||    
T  24674015 ccgaactc 24674022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 252
Target Start/End: Original strand, 9551376 - 9551526
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgtttt--taatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaa 201  Q
    ||||||||||||||||||||||  |||||||| ||||||||||||  |||||||||||||||||  | |||||||||| ||||| |||||||  ||||||    
T  9551376 catgttcccttcttctctcataacgcaacaaccttttattgtttttttaatttaaaatctcaaccgtgagatatttttttgccaaatgtcttccatccaa 9551475  T
Q  202 actccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
     | | |||| ||||||||| || | || |||||| ||||||| ||||||||    
T  9551476 gccctaaatggagtaaatggagtttagtctaaatggagcatacccgaactc 9551526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 253
Target Start/End: Complemental strand, 7062118 - 7061971
Alignment:
Q  107 gttcccttcttctctcatattgcaacaacattttattg-tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactc 205  Q
    ||||| ||||||||||||||  ||||||| |||||||| ||||||||| |||||||||||  ||| |||||||| |||||||||||||  ||||||||      
T  7062118 gttccattcttctctcatatcacaacaaccttttattgatttttaattaaaaatctcaaccgttatatatttttttgccacatgtcttgcatccaaacca 7062019  T
Q  206 caaatagagtaaatgaagctgagcctaaattgagcatatccgaactcg 253  Q
     |||| ||||||||  || | ||||||||| ||||||| |||||||||    
T  7062018 taaatggagtaaatagaggttagcctaaatggagcatacccgaactcg 7061971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 145 - 250
Target Start/End: Complemental strand, 5465960 - 5465855
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    |||||||||||||||||||||  |||||||||||| |||||||||||||| ||| |||| | ||||  |||||||||| || ||||||||| |||||||     
T  5465960 tttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttacatctaaaccctaaatgaagtaaatgaaacttagcctaaatggagcatac 5465861  T
Q  245 ccgaac 250  Q
    ||||||    
T  5465860 ccgaac 5465855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 11790014 - 11790114
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgtttt-taatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    ||||| ||||||||||||||| | |||||||  |||||||||||| |||||||||||||||||  |||||||||||| |||||||||||||  |||||||    
T  11790014 catgtccccttcttctctcatgtcgcaacaatcttttattgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaa 11790113  T
Q  203 c 203  Q
    |    
T  11790114 c 11790114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 17914942 - 17915050
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    ||||||||||||||| |||||  || ||||||||| |||||||||||||  |||||||||  |||| ||||||||| | || ||||||||| ||||||||    
T  17914942 tttttaatttaaaatatcaaccgttggatatttttttgccacatgtcttgcatccaaactttaaatggagtaaatggaacttagcctaaatggagcatat 17915041  T
Q  245 ccgaactcg 253  Q
    |||||||||    
T  17915042 ccgaactcg 17915050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 113 - 235
Target Start/End: Original strand, 1025067 - 1025190
Alignment:
Q  113 ttcttctctcatattgcaacaacattttattgtttt-taatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaata 211  Q
    |||| ||||||||| ||||| ||||||||||||||| |||||||||||||||||  ||| |||||||| |  ||||| ||||  |||||||||| ||||     
T  1025067 ttctcctctcatatcgcaaccacattttattgttttttaatttaaaatctcaaccgttatatatttttttatcacatatcttgcatccaaactctaaatt 1025166  T
Q  212 gagtaaatgaagctgagcctaaat 235  Q
    |||||||||||||| |||| ||||    
T  1025167 gagtaaatgaagcttagccaaaat 1025190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 26297461 - 26297363
Alignment:
Q  105 atgttcccttcttctctcatattgcaacaacattttatt-gtttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaac 203  Q
    ||||| ||||||||||||||||||||||||| |||||||  ||||||||||||||||||||   |||||||||||| |||||||||||||  ||||||||    
T  26297461 atgtttccttcttctctcatattgcaacaaccttttattattttttaatttaaaatctcaatcgttagatattttt-tgccacatgtcttgcatccaaac 26297363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 5466005 - 5466117
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgtttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaac 203  Q
    |||||||||||||| |||||||| |||||||  ||||||||||||| | |||   || ||||  |||||||||||| |||||||||||||| ||||||||    
T  5466005 catgttcccttcttttctcatatcgcaacaatcttttattgttttttaatta---tcccaaccgttagatatttttgtgccacatgtcttacatccaaac 5466101  T
Q  204 tccaaatagagtaaat 219  Q
     | |||||||||||||    
T  5466102 cctaaatagagtaaat 5466117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 252
Target Start/End: Original strand, 21785861 - 21785999
Alignment:
Q  107 gttcccttcttctctcatattgcaacaacattttattgtttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactcc 206  Q
    |||||||||||||||||||| |||||||| ||||       ||||||||||||||||| | |||||| ||||| ||||||||||  |  ||||||||||     
T  21785861 gttcccttcttctctcatatcgcaacaacctttt-------ttaatttaaaatctcaattgttagatgtttttttgccacatgtaatgcatccaaactct 21785953  T
Q  207 aaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
    |||| ||||||||| |||| ||||||||| |   ||||||||||||    
T  21785954 aaatggagtaaatggagcttagcctaaatgggatatatccgaactc 21785999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 11789966 - 11789858
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    |||||||||||||||||||||  ||  |||||||| |||||||| ||||  ||| |||| | |||| ||||||||||||||  |||||||| |||||||     
T  11789966 tttttaatttaaaatctcaaccgttgaatatttttttgccacatatcttgcatctaaaccctaaatggagtaaatgaagctttgcctaaatggagcatac 11789867  T
Q  245 ccgaactcg 253  Q
    |||||||||    
T  11789866 ccgaactcg 11789858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 243
Target Start/End: Complemental strand, 46993204 - 46993076
Alignment:
Q  116 ttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagag 214  Q
    ||||||||||| |||||||  |||||| |||||| ||||||| ||||||||  |||||||||||| ||| |||| ||||  |||||||| | |||||||     
T  46993204 ttctctcatatcgcaacaatcttttatcgttttttaatttaacatctcaaccgttagatatttttttgctacatatcttgcatccaaaccctaaatagaa 46993105  T
Q  215 taaatgaagctgagcctaaattgagcata 243  Q
    |||||| |||| | ||||||| |||||||    
T  46993104 taaatggagcttaacctaaatggagcata 46993076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 42475976 - 42475893
Alignment:
Q  152 tttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaat 235  Q
    |||||||||||||   |||||||||||| |||||| ||||||  |||||||| | ||||||||||||||||||| |||||||||    
T  42475976 tttaaaatctcaatcgttagatatttttttgccacgtgtcttgcatccaaaccctaaatagagtaaatgaagcttagcctaaat 42475893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 223
Target Start/End: Original strand, 19037874 - 19037992
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattg-tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||||| || ||||||||||| |||||||| |||||||| |||||||||||| |||||||   ||||  |||||| |||||||||||||  |||||||    
T  19037874 catgttccatttttctctcatatcgcaacaaccttttattgttttttaatttaacatctcaatcgttag--atttttttgccacatgtcttgcatccaaa 19037971  T
Q  203 ctccaaatagagtaaatgaag 223  Q
      | |||| ||||||||||||    
T  19037972 tcctaaatggagtaaatgaag 19037992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 32591300 - 32591417
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattg-tttttaatttaaaatctcaacttttagata-tttttctgccacatgtcttatatccaa 201  Q
    |||| ||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||   ||| ||| ||||| | |||||||||||| ||||||    
T  32591300 catgctcctttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaatcattaaatattttttttaccacatgtcttacatccaa 32591399  T
Q  202 actccaaatagagtaaat 219  Q
    |  | |||| ||||||||    
T  32591400 atcctaaattgagtaaat 32591417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 17914829 - 17914762
Alignment:
Q  137 ttttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaac 203  Q
    ||||||||||||| ||||||||||||||||| || ||||||||| |||||||||||||  ||||||||    
T  17914829 ttttattgttttttaatttaaaatctcaactgttggatatttttttgccacatgtcttgcatccaaac 17914762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 193
Target Start/End: Complemental strand, 23655215 - 23655126
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtctt 193  Q
    ||||||||||| ||| |||||||||||| ||| ||||||| ||||| |||||||||| |||||  |||||||||||| |||| ||||||||    
T  23655215 catgttccctt-ttccctcatattgcaaaaaccttttattattttttaatttaaaatttcaaccgttagatatttttttgccgcatgtctt 23655126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 26297507 - 26297572
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaat 210  Q
    |||||||||||||||||||||| |||||||||||| || ||||| ||||  |||||||||| ||||    
T  26297507 tttttaatttaaaatctcaactgttagatatttttttgtcacatatcttgcatccaaactctaaat 26297572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 9551331 - 9551274
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||||||||||||||||||  |||||||||||| || ||||||||||  |||||||    
T  9551331 tttttaatttaaaatctcaaccgttagatatttttttgacacatgtcttgcatccaaa 9551274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 23655261 - 23655366
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatt-tttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcata 243  Q
    ||||||||||||||| |||||  |||||| || ||| |||||||||||||  ||| |||| | |||| || ||||||||||| | ||||||| |||||||    
T  23655261 tttttaatttaaaatttcaaccgttagattttctttttgccacatgtcttgcatctaaaccctaaatggaataaatgaagcttaacctaaatggagcata 23655360  T
Q  244 tccgaa 249  Q
     |||||    
T  23655361 cccgaa 23655366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 54316050 - 54316130
Alignment:
Q  172 atatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
    |||||||| |||||||||||||  |||||||| | |||| ||||||||  |||| ||||||||| ||||||| ||| ||||    
T  54316050 atatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatagagcttagcctaaatggagcatacccggactc 54316130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 51959693 - 51959768
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactcc-aaatagagtaaat 219  Q
    ||||||||||||||||||| | ||| ||| ||||| |||||||||||||  |||||||| || ||||||| |||||    
T  51959693 tttttaatttaaaatctcagcctttggatgtttttttgccacatgtcttgcatccaaacccctaaatagactaaat 51959768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 3556567 - 3556617
Alignment:
Q  153 ttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaac 203  Q
    |||||||||||||  |||||||||||| |||||||||||||  ||||||||    
T  3556567 ttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaac 3556617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 104 - 252
Target Start/End: Original strand, 38499970 - 38500122
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattg-----tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatc 198  Q
    ||||||||||||||||||||||| |||||||| ||||||||     |||||||||||||||||||||| |||||||||||| | |||||||||||| |||    
T  38499970 catgttcccttcttctctcatatcgcaacaaccttttattgtttgttttttaatttaaaatctcaactgttagatattttt-ttccacatgtcttacatc 38500068  T
Q  199 caaactccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
    ||||| | || | ||||||||| |||| ||||||||| ||||||| ||||||||    
T  38500069 caaaccctaattggagtaaatggagcttagcctaaatggagcatacccgaactc 38500122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 104 - 244
Target Start/End: Complemental strand, 43797501 - 43797360
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||  || ||||||||| |||||||||||||  |||||||    
T  43797501 catgttcccttcttctctcatatggcaacaaccttttattgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaa 43797402  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    |   |||| ||||||||| |||| ||||||||| ||||||||    
T  43797401 ccttaaatggagtaaatggagcttagcctaaatggagcatat 43797360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 8799465 - 8799317
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgtttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaac 203  Q
    ||||||||||||||||||||||| |||||||| |||  |  |||||||||||||||||||||| |||||||| ||| |||||||||||||  ||||||||    
T  8799465 catgttcccttcttctctcatatcgcaacaacctttattattttttaatttaaaatctcaactgttagatatatttttgccacatgtcttgcatccaaac 8799366  T
Q  204 tccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
     | |||| ||||||||| |||  ||||||||| ||||||| ||||||||    
T  8799365 cctaaatggagtaaatggagcctagcctaaatggagcatacccgaactc 8799317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 4041377 - 4041483
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    |||||||||||||||||||||  |||||||||||| |||||||||||||  |||||||| | |||| |||||||||||||| ||||||||| |||||||     
T  4041377 tttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatac 4041476  T
Q  245 ccgaact 251  Q
    |||||||    
T  4041477 ccgaact 4041483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 53197147 - 53197275
Alignment:
Q  114 tcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatag 212  Q
    ||||||||||||| |||||||| ||||||||||||| ||||||||||||  || || |||||||||| |||||||||||||  |||||||| | |||| |    
T  53197147 tcttctctcatatcgcaacaaccttttattgttttttaatttaaaatcttgacgtt-agatattttt-tgccacatgtcttgcatccaaaccctaaatgg 53197244  T
Q  213 agtaaatgaagctgagcctaaattgagcata 243  Q
    ||||||||||||| ||||||||| |||||||    
T  53197245 agtaaatgaagcttagcctaaatggagcata 53197275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 46883553 - 46883464
Alignment:
Q  115 cttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaac 203  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||||||||||  |||||||||||| |||||||||||||| ||||||||    
T  46883553 cttccctcatattgcaacaaccttttattgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttacatccaaac 46883464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 252
Target Start/End: Complemental strand, 38499926 - 38499819
Alignment:
Q  144 gtttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcata 243  Q
    ||||||| ||||||||||||||  |||||| ||||| ||||||||||||| ||||||||| | |||| ||||||||| |||| ||||||||| |||||||    
T  38499926 gtttttagtttaaaatctcaaccgttagattttttt-tgccacatgtcttgtatccaaaccctaaatggagtaaatggagcttagcctaaatggagcata 38499828  T
Q  244 tccgaactc 252  Q
     ||||||||    
T  38499827 cccgaactc 38499819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 252
Target Start/End: Complemental strand, 53197095 - 53196988
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    |||||||||||||||||||||  |||||||||||| |||||||||| ||  |||||||| | ||||||||||||||||| | ||| ||||| | |||||     
T  53197095 tttttaatttaaaatctcaaccgttagatatttttttgccacatgttttgcatccaaaccctaaatagagtaaatgaagtttagcttaaatggggcatac 53196996  T
Q  245 ccgaactc 252  Q
    ||||||||    
T  53196995 ccgaactc 53196988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 219
Target Start/End: Original strand, 43797796 - 43797909
Alignment:
Q  105 atgttcccttcttctctcatattgcaacaacattttattgtttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaact 204  Q
    |||||| ||| |||| |||||| |||||||| ||||||||||||||||||||||||||| |  |||||||||||| |||||||||||||  |||||| |     
T  43797796 atgttctctttttctatcatatcgcaacaaccttttattgtttttaatttaaaatctcatccgttagatattttt-tgccacatgtcttgcatccaagcc 43797894  T
Q  205 ccaaatagagtaaat 219  Q
    | |||| ||||||||    
T  43797895 ctaaatggagtaaat 43797909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 203
Target Start/End: Complemental strand, 29828826 - 29828725
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgt-ttttaatttaaaatctcaacttttagata-tttttctgccacatgtcttatatccaa 201  Q
    ||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||  ||| ||| ||||| || |||| |||||| ||||||    
T  29828826 catgttcccttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaaccgttaaatattttttttgtcacaagtcttacatccaa 29828727  T
Q  202 ac 203  Q
    ||    
T  29828726 ac 29828725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 4041329 - 4041231
Alignment:
Q  107 gttcccttcttctctcatattgcaacaacattttattgt-ttttaatttaaaatctcaacttttagata-tttttctgccacatgtcttatatccaaac 203  Q
    |||||||||||||||||||| |||||||  ||||||||| ||||||||||||||||||||  ||||||| ||||| || ||||||||||| || |||||    
T  4041329 gttcccttcttctctcatatcgcaacaatcttttattgttttttaatttaaaatctcaaccgttagatattttttttgtcacatgtcttacattcaaac 4041231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 104 - 252
Target Start/End: Original strand, 48346130 - 48346280
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattg-tttttaatttaaaatctcaacttttag-atatttttctgccacatgtcttatatccaa 201  Q
    ||||||| ||||||||||||||| |||||||| ||||| || |||||||||||||||||||||  ||||  | ||||| |||||||||| ||  ||||||    
T  48346130 catgttctcttcttctctcatatcgcaacaaccttttactgttttttaatttaaaatctcaaccgttagtttttttttttgccacatgttttgcatccaa 48346229  T
Q  202 actccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
    | || ||||| |||||||  | || | ||||||| ||||||| ||||||||    
T  48346230 attctaaataaagtaaatagaactcaacctaaatggagcatacccgaactc 48346280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 29828875 - 29828974
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    |||||||||||||||||||||  |||||||||||| |||||||| ||||| |||||||  | |||| || |||||| |||| ||| ||||| ||||||||    
T  29828875 tttttaatttaaaatctcaaccgttagatatttttttgccacatatcttacatccaaatcctaaatggaataaatggagcttagcttaaatagagcatat 29828974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 46883606 - 46883681
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatg 220  Q
    |||||||||||||||||||||  |||||||||||| |||||||||||||  |||||||| | |||| |||||||||    
T  46883606 tttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatg 46883681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 25349904 - 25349984
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagct 225  Q
    |||||||||||||||||||||  |||||| ||||| || ||||||||||| |||||||| | ||||||| |||||| ||||    
T  25349904 tttttaatttaaaatctcaaccgttagatgtttttttggcacatgtcttacatccaaaccctaaatagaataaatggagct 25349984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 43797545 - 43797644
Alignment:
Q  144 gtttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcata 243  Q
    |||||||||||||||||| |||  || |||| |||| || ||||||||||  |||||||| | |||||||||||||| | || ||||||||| |||||||    
T  43797545 gtttttaatttaaaatcttaaccgttggatacttttttgtcacatgtctttcatccaaaccctaaatagagtaaatggatcttagcctaaatggagcata 43797644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 43797750 - 43797692
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaac 203  Q
    ||||||||||||||| |||||  |||||||||||| |||||||||||||| ||||||||    
T  43797750 tttttaatttaaaatttcaaccattagatatttttttgccacatgtcttacatccaaac 43797692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 8799510 - 8799585
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatg 220  Q
    |||||||||||||||||||||  ||| |||||||| |||||||||||||  ||| |||| | |||| |||||||||    
T  8799510 tttttaatttaaaatctcaaccgttatatatttttttgccacatgtcttgcatctaaaccctaaatggagtaaatg 8799585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 20383229 - 20383299
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagt 215  Q
    |||||||||||||||||||||  ||||||| |||| | ||||| |||||  |||||||||| |||| ||||    
T  20383229 tttttaatttaaaatctcaaccgttagatacttttttaccacacgtctttcatccaaactctaaatggagt 20383299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 20383179 - 20383143
Alignment:
Q  106 tgttcccttcttctctcatattgcaacaacattttat 142  Q
    |||||||||||||||||||||  ||||||||||||||    
T  20383179 tgttcccttcttctctcatatcacaacaacattttat 20383143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 104 - 253
Target Start/End: Complemental strand, 24883118 - 24882970
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgtttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaac 203  Q
    ||||||| ||||||||||||||| |||||||| |||||||| ||||||||||||||||||||  ||| || ||||| |||||| ||||||  ||||||||    
T  24883118 catgttctcttcttctctcatatcgcaacaaccttttattgattttaatttaaaatctcaaccgttacat-tttttttgccacgtgtcttgcatccaaac 24883020  T
Q  204 tccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactcg 253  Q
     | |||| ||||||||| || | ||||||||| ||||||| |||||||||    
T  24883019 cctaaatggagtaaatggagattagcctaaatggagcatacccgaactcg 24882970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 243
Target Start/End: Complemental strand, 5772057 - 5771917
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgt-ttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||||||||||| ||| |||| |||||||| |||||| || ||||||||||||||||||||  |||||||||||| ||||| || ||||| || ||||    
T  5772057 catgttcccttcttttcttatatcgcaacaaccttttatagtcttttaatttaaaatctcaaccgttagatatttttttgccatatatcttacattcaaa 5771958  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcata 243  Q
    ||| |||| |||||||||||||| || |||||| |||||||    
T  5771957 ctctaaatggagtaaatgaagcttagtctaaatggagcata 5771917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 104 - 250
Target Start/End: Complemental strand, 34970134 - 34969987
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||  |||||||||||| | |||||||||||  |||||||    
T  34970134 catgttcccttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaaccgttagatatttttttaccacatgtcttgcatccaaa 34970035  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaac 250  Q
      | |||| ||||||||| || | | |||||||  |||||| ||||||    
T  34970034 tcctaaattgagtaaatggagtttaacctaaatgaagcatacccgaac 34969987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 113 - 243
Target Start/End: Original strand, 49776984 - 49777115
Alignment:
Q  113 ttcttctctcatattgcaacaacattttattgtttt-taatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaata 211  Q
    ||||||| ||||||||||||||| |||||||||||| |||||||||||||||||  |||||||||||| || ||||||||||  |||||||| | |||||    
T  49776984 ttcttctttcatattgcaacaaccttttattgttttttaatttaaaatctcaaccgttagatatttttttgtcacatgtcttgcatccaaaccctaaata 49777083  T
Q  212 gagtaaatgaagctgagcctaaattgagcata 243  Q
    || |||||| || | ||||||||| |||||||    
T  49777084 gaataaatggagtttagcctaaatggagcata 49777115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 27171951 - 27172051
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||| |||| |||||||||||  |||||||||||| |||||||||||||| |||||||    
T  27171951 catgttcccttcttctctcatatcacaacaaccttttattgttttttaattgaaaatctcaaccgttagatatttttttgccacatgtcttacatccaaa 27172050  T
Q  203 c 203  Q
    |    
T  27172051 c 27172051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 3385460 - 3385308
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttct---gccacatgtcttatatcc 199  Q
    ||||||| ||||||||||||||| |||||||| ||||||| ||||| |||||||||||| |||  |||||||||||| |   ||||||||||||| ||||    
T  3385460 catgttctcttcttctctcatatcgcaacaaccttttattattttttaatttaaaatcttaaccgttagatattttttttttgccacatgtcttacatcc 3385361  T
Q  200 aaactccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
    |||| | |||| | ||||| |||||| |||||||||  |||||| ||||||||    
T  3385360 aaaccctaaatggggtaaacgaagcttagcctaaatgaagcatacccgaactc 3385308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 27171906 - 27171800
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    |||||||||||||||||| ||  |||||||||||| |||||||||||||| ||||||||   |||| |||||||||||||| |||||||||  ||||||     
T  27171906 tttttaatttaaaatctcgaccgttagatatttttttgccacatgtcttacatccaaaccataaatggagtaaatgaagcttagcctaaatgaagcatac 27171807  T
Q  245 ccgaact 251  Q
    |||||||    
T  27171806 ccgaact 27171800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 104 - 242
Target Start/End: Complemental strand, 33401006 - 33400865
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgt-ttttaatttaaaatctcaacttttagata--tttttctgccacatgtcttatatcca 200  Q
    ||||||||||||||||||||||| |||||||| ||||||||| ||||| |||||||||| |||  |||||||  ||||| ||||||||| |||| |||||    
T  33401006 catgttcccttcttctctcatatcgcaacaactttttattgttttttagtttaaaatcttaaccattagatacttttttttgccacatgccttacatcca 33400907  T
Q  201 aactccaaatagagtaaatgaagctgagcctaaattgagcat 242  Q
    |||   |||| ||||||||| |||| ||| ||||| ||||||    
T  33400906 aaccttaaatggagtaaatggagcttagcttaaatggagcat 33400865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 33156604 - 33156456
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgt-ttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||||||||||||||||||||  ||||||| ||||||||| |||||||||||||||||||   |||||| || || ||  | |||||||| |||||||    
T  33156604 catgttcccttcttctctcatatcacaacaactttttattgttttttaatttaaaatctcaatcgttagattttgttttgttagatgtcttacatccaaa 33156505  T
Q  203 ctccaaatagagtaaatgaagctgagcctaaattgagcatatccgaactc 252  Q
    ||| |||| ||||||||| |||  ||||| ||| ||||||| ||||||||    
T  33156504 ctctaaatggagtaaatggagcctagcct-aatggagcatacccgaactc 33156456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 203
Target Start/End: Complemental strand, 38338816 - 38338716
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgttttt-aatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    ||||||||||| |||||| |||| |||||||| ||||||||||||| ||||||||||||||||  |||||||||||| ||||| || ||||| |||||||    
T  38338816 catgttcccttattctcttatatcgcaacaaccttttattgttttttaatttaaaatctcaaccgttagatatttttttgccatatatcttacatccaaa 38338717  T
Q  203 c 203  Q
    |    
T  38338716 c 38338716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 3385505 - 3385612
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    |||||||||||||||||||||  |||||||||||| | |||||| ||||| |||||||| | |||| ||||||||| ||||  |||||||| |||||||     
T  3385505 tttttaatttaaaatctcaaccgttagatatttttttaccacatatcttacatccaaaccctaaatggagtaaatggagcttggcctaaatggagcatac 3385604  T
Q  245 ccgaactc 252  Q
    ||||||||    
T  3385605 ccgaactc 3385612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 24883162 - 24883269
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    |||||||||||||||||||||  |||||||||||| |||||||| ||||  |||||||| | |||| ||||||||| |||| ||||||||| || ||||     
T  24883162 tttttaatttaaaatctcaaccgttagatatttttttgccacatatcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggaacatac 24883261  T
Q  245 ccgaactc 252  Q
    ||||||||    
T  24883262 ccgaactc 24883269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 243
Target Start/End: Original strand, 33156649 - 33156746
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcata 243  Q
    |||||||||||||||||||||  |||||| ||||| ||||||||||||| ||||||||| | |||| |||||||| ||||| ||||||||| |||||||    
T  33156649 tttttaatttaaaatctcaaccgttagattttttt-tgccacatgtcttgtatccaaaccctaaatggagtaaataaagcttagcctaaatggagcata 33156746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 37948940 - 37949038
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattg-tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaa 201  Q
    |||||||| |||||||||||||| |||||||| |||||||  ||||||||||||||||| |||  |||||||||| | |||||||||||||| ||||||    
T  37948940 catgttcctttcttctctcatatcgcaacaaccttttatttatttttaatttaaaatcttaaccattagatatttgtttgccacatgtcttacatccaa 37949038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 37948895 - 37948795
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    |||||||||||||||||||||  |||||||||||| ||| |||||||||| ||||||||   |||| |||||||||||||| | | ||||| ||||||||    
T  37948895 tttttaatttaaaatctcaaccgttagatatttttttgcaacatgtcttacatccaaaccttaaattgagtaaatgaagcttaacttaaatggagcatat 37948796  T
Q  245 c 245  Q
    |    
T  37948795 c 37948795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 220
Target Start/End: Original strand, 13947074 - 13947191
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgtttt-taatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||| |||||||||||  ||| |||||||| |||||||||||| ||||||||||| |||||  ||| |||||||| | |||||||||||| |||||||    
T  13947074 catgtttccttcttctcttgtatcgcaacaaccttttattgttttttaatttaaaatatcaaccgttacatatttttttaccacatgtcttacatccaaa 13947173  T
Q  203 ctccaaatagagtaaatg 220  Q
    | | |||| || ||||||    
T  13947174 cgctaaatggaataaatg 13947191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 42082968 - 42083044
Alignment:
Q  104 catgttcccttcttctctcatattgcaacaacattttattgtttt-taatttaaaatctcaacttttagatattttt 179  Q
    |||||||||||||||||||||||  ||||||| ||||||| |||| |||||||||||||||||  ||||||||||||    
T  42082968 catgttcccttcttctctcatatcacaacaaccttttattattttataatttaaaatctcaaccgttagatattttt 42083044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 13947029 - 13946971
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaac 203  Q
    |||||||||||||||||||||  |||||||||||| |||||||||||||| ||||||||    
T  13947029 tttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttacatccaaac 13946971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 38338861 - 38338919
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaac 203  Q
    ||||||||||||||| |||||| |||||||||||| |||||||||||||| ||||||||    
T  38338861 tttttaatttaaaatttcaactgttagatatttttttgccacatgtcttacatccaaac 38338919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 34970179 - 34970254
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatg 220  Q
    ||||||||||||||||| |||  |||||||||||| |||||||||||||| ||||||||   ||||| ||||||||    
T  34970179 tttttaatttaaaatcttaaccgttagatatttttttgccacatgtcttacatccaaaccttaaataaagtaaatg 34970254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 39781217 - 39781291
Alignment:
Q  105 atgttcccttcttctctcatattgcaacaacattttattg-tttttaatttaaaatctcaacttttagatattttt 179  Q
    |||||||||||||||||||||| ||||||||  ||||||| |||||||||||||||||||||  |||||| |||||    
T  39781217 atgttcccttcttctctcatatcgcaacaac-ctttattgttttttaatttaaaatctcaaccgttagatgttttt 39781291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 49776925 - 49776818
Alignment:
Q  146 ttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatatc 245  Q
    ||||||||||||||||||||  ||  |||||||| | |||||||||||  |||||||  | |||| |||||||| ||||| ||| ||||| ||||||| |    
T  49776925 ttttaatttaaaatctcaaccgttcaatatttttttaccacatgtcttgcatccaaatcctaaatggagtaaataaagcttagcttaaatggagcatacc 49776826  T
Q  246 cgaactcg 253  Q
    ||||||||    
T  49776825 cgaactcg 49776818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 33401051 - 33401156
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaactccaaatagagtaaatgaagctgagcctaaattgagcatat 244  Q
    ||||||||||||||||| |||  ||| || ||||| |||||||||||||| ||| ||||   ||||| |||||||  |||| |||||||||  |||||||    
T  33401051 tttttaatttaaaatcttaaccgtta-atttttttttgccacatgtcttacatctaaaccttaaataaagtaaattgagcttagcctaaatgtagcatat 33401149  T
Q  245 ccgaact 251  Q
    |||||||    
T  33401150 ccgaact 33401156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 43297045 - 43297102
Alignment:
Q  145 tttttaatttaaaatctcaacttttagatatttttctgccacatgtcttatatccaaa 202  Q
    |||||||||||||||||||||  |||||||||||| || ||||||||||  |||||||    
T  43297045 tttttaatttaaaatctcaaccgttagatatttttttggcacatgtcttgcatccaaa 43297102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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