View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_high_112 (Length: 285)

Name: NF1511_high_112
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_high_112
NF1511_high_112
[»] chr3 (3 HSPs)
chr3 (39-198)||(4867184-4867342)
chr3 (198-270)||(4865049-4865121)
chr3 (5-47)||(4867353-4867395)
[»] chr6 (1 HSPs)
chr6 (64-270)||(19116533-19116739)
[»] chr1 (2 HSPs)
chr1 (39-219)||(7324444-7324624)
chr1 (177-269)||(44387404-44387497)
[»] scaffold0009 (1 HSPs)
scaffold0009 (188-270)||(31933-32016)
[»] chr4 (3 HSPs)
chr4 (183-269)||(45181820-45181907)
chr4 (173-270)||(1853694-1853792)
chr4 (173-270)||(36650143-36650241)
[»] scaffold0169 (1 HSPs)
scaffold0169 (173-270)||(22227-22325)
[»] chr7 (1 HSPs)
chr7 (173-270)||(7084805-7084903)
[»] chr8 (1 HSPs)
chr8 (60-213)||(7231786-7231939)


Alignment Details
Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 39 - 198
Target Start/End: Complemental strand, 4867342 - 4867184
Alignment:
Q  39 tctcttggtcttccaaacgataacctactttatcttgttcaagtgctgaagcagaatatcaagcggttgccaatgtggtttttgaatcttgttgcttacg 138  Q
    |||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| || |||| |||||| ||||| |||||||||||| ||| |    
T  4867342 tctcatggtcttccaaacgacaacctactttatctcgttcaagtgctgaagcagaatatcgaggggtt-ccaatgcggtttctgaatcttgttggttatg 4867244  T
Q  139 aaacttgcttttggaattacatttccccattcacaaggctagtttagtttattgtgataa 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4867243 aaacttgcttttggaattacatttccccattcacaaggctagtttagtttattgtgataa 4867184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 198 - 270
Target Start/End: Complemental strand, 4865121 - 4865049
Alignment:
Q  198 atgttagtgccatatatctatccgaaatcccgtccagcaccaacgcacaaaacatatcgaaatggacattcat 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4865121 atgttagtgccatatatctatccgaaatcccgtccagcaccaacgcacaaaacatatcgaaatggacattcat 4865049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 4867395 - 4867353
Alignment:
Q  5 agatacctgacgatccacctctgattactgtgtatctcttggt 47  Q
    ||||||||||||||||||||||| || ||||||||||||||||    
T  4867395 agatacctgacgatccacctctggttgctgtgtatctcttggt 4867353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 64 - 270
Target Start/End: Complemental strand, 19116739 - 19116533
Alignment:
Q  64 tactttatcttgttcaagtgctgaagcagaatatcaagcggttgccaatgtggtttttgaatcttgttgcttacgaaacttgcttttggaattacatttc 163  Q
    ||||||| || |||||||||||||||| | ||||| ||  |||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| ||    
T  19116739 tactttaactcgttcaagtgctgaagccggatatcgaggagttgccaatgtggtttatgaatcttgttgcctacgaaacctgcttttggaattacatatc 19116640  T
Q  164 cccattcacaaggctagtttagtttattgtgataatgttagtgccatatatctatcc-gaaatcccgtccagcaccaacgcacaaaacatatcgaaatgg 262  Q
    ||||||||||| ||||  || ||||||| ||||||| |||||||||||||||||||| |||| |||||||||||| | |||||||||||||||  |||||    
T  19116639 cccattcacaatgctaccttggtttattatgataattttagtgccatatatctatccggaaaacccgtccagcactagcgcacaaaacatatc-taatgg 19116541  T
Q  263 acattcat 270  Q
    ||||||||    
T  19116540 acattcat 19116533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 219
Target Start/End: Complemental strand, 7324624 - 7324444
Alignment:
Q  39 tctcttggtcttccaaacgataacctactttatcttgttcaagtgctgaagcagaatatcaagcggttgccaatgtggtttttgaatcttgttgcttacg 138  Q
    |||| ||||||||||||||  |||| || |||||| | || ||||||||||| ||||| | ||  ||||||||||| || | ||| |||||||| |||||    
T  7324624 tctcatggtcttccaaacgccaacccacattatctcgctctagtgctgaagccgaataccgaggtgttgccaatgtcgtatctgagtcttgttggttacg 7324525  T
Q  139 aaacttgcttttggaattacatttccccattcacaaggctagtttagtttattgtgataatgttagtgccatatatctatc 219  Q
     ||| | |||||||| |||||||  || ||  |||||||||   | || || ||||| ||||||||||| |||||| ||||    
T  7324524 caacctacttttggagttacattgtcctatctacaaggctaccatggtctactgtgacaatgttagtgcgatatatttatc 7324444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 269
Target Start/End: Original strand, 44387404 - 44387497
Alignment:
Q  177 ctagtttagtttattgtgataatgttagtgccatatatctatc-cgaaatcccgtccagcaccaacgcacaaaacatatcgaaatggacattca 269  Q
    ||||||| || ||||||||||||||||||||||| || || ||  | ||||| || ||||| ||||| || |||||||| || |||||||||||    
T  44387404 ctagtttggtgtattgtgataatgttagtgccatctacctttctggtaatccagtgcagcatcaacgtactaaacatattgagatggacattca 44387497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 270
Target Start/End: Original strand, 31933 - 32016
Alignment:
Q  188 tattgtgataatgttagtgccatatatctatc-cgaaatcccgtccagcaccaacgcacaaaacatatcgaaatggacattcat 270  Q
    |||||||| |||||||||||||| ||||||||  | ||||| || ||||| || |||||||||||||| || ||||||||||||    
T  31933 tattgtgacaatgttagtgccatctatctatctggtaatcctgtgcagcatcagcgcacaaaacatattgagatggacattcat 32016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 45181820 - 45181907
Alignment:
Q  183 tagtttattgtgataatgttagtgccatatatctatc-cgaaatcccgtccagcaccaacgcacaaaacatatcgaaatggacattca 269  Q
    |||||||||||||||| || ||||| |||||||||||  | |||||||| ||||| ||||| || ||||| || ||||||||||||||    
T  45181820 tagtttattgtgataacgtcagtgcaatatatctatctggtaatcccgttcagcatcaacggaccaaacacattgaaatggacattca 45181907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 1853694 - 1853792
Alignment:
Q  173 aaggctagtttagtttattgtgataatgttagtgccatatatctatc-cgaaatcccgtccagcaccaacgcacaaaacatatcgaaatggacattcat 270  Q
    ||||||||||| || |||||||||||||||||||| || ||||| ||  ||||||| || || || || ||||| ||||||||||| ||||| ||||||    
T  1853694 aaggctagtttggtgtattgtgataatgttagtgcgatttatctctctggaaatccggttcaacatcagcgcactaaacatatcgagatggatattcat 1853792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 36650143 - 36650241
Alignment:
Q  173 aaggctagtttagtttattgtgataatgttagtgccatatatctatc-cgaaatcccgtccagcaccaacgcacaaaacatatcgaaatggacattcat 270  Q
    ||||||||||| || |||||||||||||||||||| || ||||| ||  ||||||| || || || || ||||| ||||||||||| ||||| ||||||    
T  36650143 aaggctagtttggtgtattgtgataatgttagtgcgatttatctctctggaaatccggttcaacatcagcgcactaaacatatcgagatggatattcat 36650241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 22227 - 22325
Alignment:
Q  173 aaggctagtttagtttattgtgataatgttagtgccatatatctatc-cgaaatcccgtccagcaccaacgcacaaaacatatcgaaatggacattcat 270  Q
    ||||||||||| || |||||||||||||||||||| || ||||| ||  ||||||| || || || || ||||| ||||||||||| ||||| ||||||    
T  22227 aaggctagtttggtgtattgtgataatgttagtgcgatttatctctctggaaatccggttcaacatcagcgcactaaacatatcgagatggatattcat 22325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 7084805 - 7084903
Alignment:
Q  173 aaggctagtttagtttattgtgataatgttagtgccatatatctatc-cgaaatcccgtccagcaccaacgcacaaaacatatcgaaatggacattcat 270  Q
    ||||||||||| || |||||||||||||||||||| || ||||| ||  ||||||| || || || || ||||| ||||||||||| ||||| ||||||    
T  7084805 aaggctagtttggtgtattgtgataatgttagtgcgatttatctctctggaaatccggttcaacatcagcgcactaaacatatcgagatggatattcat 7084903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 213
Target Start/End: Complemental strand, 7231939 - 7231786
Alignment:
Q  60 aacctactttatcttgttcaagtgctgaagcagaatatcaagcggttgccaatgtggtttttgaatcttgttgcttacgaaacttgcttttggaattaca 159  Q
    |||| ||| ||||| | |||||||||||||| ||||||  || |||||| ||||| || | ||||||||||||  | |||||| | || |||||| | ||    
T  7231939 aaccaactctatctcgatcaagtgctgaagccgaatatagaggggttgcaaatgttgtctctgaatcttgttggatccgaaaccttctcttggaactcca 7231840  T
Q  160 tttccccattcacaaggctagtttagtttattgtgataatgttagtgccatata 213  Q
    || ||| ||||| || ||||  |||||  ||||||||||| ||||||| |||||    
T  7231839 ttgcccaattcagaaagctaccttagtgcattgtgataatattagtgcaatata 7231786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University