View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_113 (Length: 283)
Name: NF1511_high_113
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_113 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 63 - 264
Target Start/End: Complemental strand, 39487436 - 39487235
Alignment:
| Q |
63 |
catgacagattcaaaattatgtgaacagaaaagtacaaaccgattgattataaacacaaataaaacatttgaagagatagatagcaaagcataaacataa |
162 |
Q |
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| T |
39487436 |
catgacagattcaaaattatgtgaacagaaaagtacaaaccgattgattataaacacaaataaaacatttgaagagatagatagcaaagcataaacataa |
39487337 |
T |
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| Q |
163 |
agattatacaaaacgaaaacacatacctattaatttgaagccaaggctgcggcgagtaagagaaagtgaaccctggtagggtaaaaccctagcggggtaa |
262 |
Q |
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| T |
39487336 |
agattatacaaaacgaaaacatatacctattaatttgaagccaaggctgcggcgagtaagagaaagtgaaccctagtagggtaaaaccctagcggggtaa |
39487237 |
T |
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| Q |
263 |
ct |
264 |
Q |
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|| |
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| T |
39487236 |
ct |
39487235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 39487481 - 39487449
Alignment:
| Q |
14 |
aatattattaaaaagaaaaaatcattctataac |
46 |
Q |
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| T |
39487481 |
aatattattaaaaagaaaaaatcattctataac |
39487449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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