View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_high_121 (Length: 280)

Name: NF1511_high_121
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_high_121
NF1511_high_121
[»] chr4 (10 HSPs)
chr4 (1-204)||(44847172-44847375)
chr4 (8-88)||(44896048-44896128)
chr4 (100-159)||(44860140-44860199)
chr4 (100-198)||(44896161-44896259)
chr4 (116-188)||(44870887-44870959)
chr4 (18-88)||(44870780-44870850)
chr4 (15-73)||(44835733-44835791)
chr4 (19-58)||(44860038-44860077)
chr4 (240-280)||(34133605-34133645)
chr4 (240-280)||(34127332-34127372)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 44847172 - 44847375
Alignment:
Q  1 tatacttttgttttgacatttgacagcttttgattttctaaattcgaatgaggatggactcaatgtcactgtatggtataactcaacccgcaaggttgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44847172 tatacttttgttttgacatttgacagcttttgattttctaaattcgaatgaggatggactcaatgtcactgtatggtataactcaacccgcaaggttgga 44847271  T
Q  101 ttgttgcggattcctcgttctgtcaatctggtataaatctaaaacctgttttaattgtttcatcttccttgctgatgttatcctaaatctctaataatgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44847272 ttgttgcggattcctcgttctgtcaatctggtataaatctaaaacctgttttaatcgtttcatcttccttgctgatgttatcctaaatctctaataatgg 44847371  T
Q  201 atat 204  Q
    ||||    
T  44847372 atat 44847375  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 44896048 - 44896128
Alignment:
Q  8 ttgttttgacatttgacagcttttgattttctaaattcgaatgaggatggactcaatgtcactgtatggtataactcaacc 88  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||| || ||||||    
T  44896048 ttgttttcacatttgacagcttttgattttctaaattcgaatgagaatggattcaacgtcactgtatggtacaagtcaacc 44896128  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 44860140 - 44860199
Alignment:
Q  100 attgttgcggattcctcgttctgtcaatctggtataaatctaaaacctgttttaattgtt 159  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||    
T  44860140 attgttgcggattcctcgttctgtaaatctggtatatatctaaaacctattttaattgtt 44860199  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 100 - 198
Target Start/End: Original strand, 44896161 - 44896259
Alignment:
Q  100 attgttgcggattcctcgttctgtcaatctggtataaatctaaaacctgttttaattgtttcatcttccttgctgatgttatcctaaatctctaataat 198  Q
    ||||||||| |||||||||||| | ||| ||||||| |||||| || ||||||||| ||| |||| ||||||||| || ||||||||||| ||||||||    
T  44896161 attgttgcgaattcctcgttctataaatttggtatatatctaacacttgttttaatggttgcatcctccttgctgctgctatcctaaatccctaataat 44896259  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 44870887 - 44870959
Alignment:
Q  116 cgttctgtcaatctggtataaatctaaaacctgttttaattgtttcatcttccttgctgatgttatcctaaat 188  Q
    |||| ||| ||||||||||||||||||||||||||||||||||| ||| ||||||||   |||||||||||||    
T  44870887 cgttttgtaaatctggtataaatctaaaacctgttttaattgttgcatattccttgccattgttatcctaaat 44870959  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 44870780 - 44870850
Alignment:
Q  18 atttgacagcttttgattttctaaattcgaatgaggatggactcaatgtcactgtatggtataactcaacc 88  Q
    |||||||||||||||||||||||||||| |||||||||||  ||||| || || ||||||| |||||||||    
T  44870780 atttgacagcttttgattttctaaattcaaatgaggatggtttcaatatcgctttatggtacaactcaacc 44870850  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 44835733 - 44835791
Alignment:
Q  15 gacatttgacagcttttgattttctaaattcgaatgaggatggactcaatgtcactgta 73  Q
    |||||||||||| ||| |||||||| ||||| |||||||||||| ||||||||||||||    
T  44835733 gacatttgacagttttcgattttctcaattcaaatgaggatggattcaatgtcactgta 44835791  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 44860038 - 44860077
Alignment:
Q  19 tttgacagcttttgattttctaaattcgaatgaggatgga 58  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  44860038 tttgacagcttttgattttctaaattcaaatgaggatgga 44860077  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 34133645 - 34133605
Alignment:
Q  240 gaccaaaactctccatcttcgaagccgaaggaattcccgaa 280  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  34133645 gaccaaaactctccatcatcgaagccaaaggaattcccgaa 34133605  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 34127372 - 34127332
Alignment:
Q  240 gaccaaaactctccatcttcgaagccgaaggaattcccgaa 280  Q
    |||||||||| |||||| | |||||||||||||||||||||    
T  34127372 gaccaaaactatccatcattgaagccgaaggaattcccgaa 34127332  T

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