View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_133 (Length: 254)
Name: NF1511_high_133
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_133 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 44188553 - 44188332
Alignment:
| Q |
18 |
attagaatgttgtcaaaagaattctttgatatctcaaacggaccactgatattggtcttgtttagcagccaacaaacttgccttagtgtcccagcatttt |
117 |
Q |
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| T |
44188553 |
attagaatgttgtcaaaagaattctttgatatctcaaacggaccactgatattggtcttgtttagcagccaacaaacttgccttagtgtcccagcatttt |
44188454 |
T |
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| Q |
118 |
gtaatgctaattggacctatgatagtgatgatagaaggtccacactccacatccagagcctggagactggagtcatgcagtttcttctcatattacttac |
217 |
Q |
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| T |
44188453 |
gtaatgctaattggacctatgatagtgatgatagaaggtccacactccacatccagaggctggagactggagtcatgcagtttcttctcatattacttac |
44188354 |
T |
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| Q |
218 |
tgtcacaacaatcaaagcacag |
239 |
Q |
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| T |
44188353 |
tgtcacaacaatcaaagcacag |
44188332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 43 - 225
Target Start/End: Complemental strand, 1329761 - 1329584
Alignment:
| Q |
43 |
ttgatatctcaaacggaccactgatattggtcttgtttagcagccaacaaacttgccttagtgtcccagcattttgtaatgctaattggacctatgatag |
142 |
Q |
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|||||||||||| |||||||| || ||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||| |
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| T |
1329761 |
ttgatatctcaatgggaccactaattttggtctcgtttagcagccaacaaacttgccttagtctgccagcattttgtaatgctagttggacctatgatag |
1329662 |
T |
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| Q |
143 |
tgatgatagaaggtc--cacactccacatccagagcctggagactggagtcatgcagtttcttctcatattacttactgtcacaa |
225 |
Q |
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| T |
1329661 |
tgatgataaaaggtcaaaacactccacatccagagc-------ctggagtcatgtagtttctactcatattacttactgtcacaa |
1329584 |
T |
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