View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_high_136 (Length: 252)

Name: NF1511_high_136
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_high_136
NF1511_high_136
[»] chr5 (3 HSPs)
chr5 (11-231)||(1672756-1672976)
chr5 (11-178)||(21124655-21124822)
chr5 (122-234)||(4081435-4081545)
[»] chr8 (3 HSPs)
chr8 (20-235)||(1776146-1776361)
chr8 (11-234)||(1782573-1782796)
chr8 (116-209)||(1800378-1800471)
[»] chr1 (5 HSPs)
chr1 (98-234)||(19790003-19790138)
chr1 (122-161)||(41324592-41324631)
chr1 (122-161)||(47249691-47249730)
chr1 (181-234)||(47249727-47249780)
chr1 (181-235)||(41324541-41324595)
[»] chr2 (2 HSPs)
chr2 (11-131)||(32315559-32315679)
chr2 (122-178)||(4845159-4845215)
[»] chr3 (1 HSPs)
chr3 (103-209)||(25729996-25730102)
[»] chr6 (1 HSPs)
chr6 (181-234)||(20905184-20905237)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 1672976 - 1672756
Alignment:
Q  11 agcatagggatggaagtgtaccagaagtcttcgttatttgcaaaggagacattttcattagagaagatatgcaattatgaataattaagagaactgatcc 110  Q
    |||| ||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1672976 agcagagggacggaagtgtaccaaaagccttcgttatttgcaaaggagacattttcattagagaagatatgcaattatggataattaagagaactgatcc 1672877  T
Q  111 atgtattgagctgaatgtgataaaggattcagatcaaatggtcatgttctccaaaccaaaaaagctcatctctcacatactaaagattgctcacaaatat 210  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1672876 atgtattgagctgaatgtgataatggattcggatcaaatggtcatgttctccaaaccaaaaaagctcacctctcacatactaaagattgctcacaaatat 1672777  T
Q  211 tagttatactttcgttggttt 231  Q
    ||||||| |||||||||||||    
T  1672776 tagttatgctttcgttggttt 1672756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 178
Target Start/End: Original strand, 21124655 - 21124822
Alignment:
Q  11 agcatagggatggaagtgtaccagaagtcttcgttatttgcaaaggagacattttcattagagaagatatgcaattatgaataattaagagaactgatcc 110  Q
    |||| ||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || |||    
T  21124655 agcagagggatgaaagtgtaccaaaagtctttgttatttgcaaaggagacattttcattagagaagatatgcaattatggataattaacagaattggtcc 21124754  T
Q  111 atgtattgagctgaatgtgataaaggattcagatcaaatggtcatgttctccaaaccaaaaaagctca 178  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21124755 atgtattgaggtgaatgtgataaaggattcagataaaatggtcatgttctccaaaccaaaaaagctca 21124822  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 234
Target Start/End: Original strand, 4081435 - 4081545
Alignment:
Q  122 tgaatgtgataaaggattcagatcaaatggtcatgttctccaaaccaaaaaagctcatctctcacatactaaagattgctcacaaatattagttatactt 221  Q
    |||||||||||| |||||||||||| |||| ||||||||| |||| |||||||||||   |||||||||||||||||| ||||||||||||| ||  |||    
T  4081435 tgaatgtgataatggattcagatcacatggccatgttctctaaactaaaaaagctca--cctcacatactaaagattggtcacaaatattagatacgctt 4081532  T
Q  222 tcgttggtttttt 234  Q
    || ||||||||||    
T  4081533 tcattggtttttt 4081545  T

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Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 1776361 - 1776146
Alignment:
Q  20 atggaagtgtaccagaagtcttcgttatttgcaaaggagacattttcattagagaagatatgcaattatgaataattaagagaactgatccatgtattga 119  Q
    ||||||| |||||| |||||||| |||| |  ||||||||||||||||||||||| ||| |||||||||| |||||| ||||||||| ||||| | ||||    
T  1776361 atggaagggtaccaaaagtcttcattatctctaaaggagacattttcattagagaggatctgcaattatggataattgagagaactggtccatatgttga 1776262  T
Q  120 gctgaatgtgataaaggattcagatcaaatggtcatgttctccaaaccaaaaaagctcatctctcacatactaaagattgctcacaaatattagttatac 219  Q
      |||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||| |||||| || |||| || |||||||||||||||| ||| |    
T  1776261 agtgaaagtgataaaggattcagatcacatggttatgttctccaaacctaaaaagctcacctctcatattctaaggagtgctcacaaatattagatatgc 1776162  T
Q  220 tttcgttggttttttg 235  Q
    |||  |||||||||||    
T  1776161 ttttattggttttttg 1776146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 1782796 - 1782573
Alignment:
Q  11 agcatagggatggaagtgtaccagaagtcttcgttatttgcaaaggagacattttcattagagaagatatgcaattatgaataattaagagaactgatcc 110  Q
    |||| ||| ||||||| |||||| |||||||| ||||  |||||||||||| | |||| | ||| |||||||||||||| |||||| ||||||||| |||    
T  1782796 agcagaggaatggaagggtaccaaaagtcttcattatcagcaaaggagacaatatcatcaaagaggatatgcaattatggataattgagagaactggtcc 1782697  T
Q  111 atgtattgagctgaatgtgataaaggattcagatcaaatggtcatgttctccaaaccaaaaaagctcatctctcacatactaaagattgctcacaaatat 210  Q
    || | ||||  |||| |||||||||||||||||||| |||||||||||||| ||||| ||||| |||| ||||||||| ||||||||||||||||||||     
T  1782696 atatgttgaagtgaaagtgataaaggattcagatcacatggtcatgttctctaaacctaaaaaactcacctctcacattctaaagattgctcacaaatac 1782597  T
Q  211 tagttatactttcgttggtttttt 234  Q
    ||  ||  ||||| ||||||||||    
T  1782596 taaataagctttcattggtttttt 1782573  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 1800471 - 1800378
Alignment:
Q  116 ttgagctgaatgtgataaaggattcagatcaaatggtcatgttctccaaaccaaaaaagctcatctctcacatactaaagattgctcacaaata 209  Q
    ||||| |||| |||||||||||||||||||| ||||||||||| || |||||| ||||||||| ||||||||| |||||  |||||| ||||||    
T  1800471 ttgaggtgaaagtgataaaggattcagatcacatggtcatgttttctaaaccagaaaagctcacctctcacattctaaaagttgctcgcaaata 1800378  T

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Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 98 - 234
Target Start/End: Original strand, 19790003 - 19790138
Alignment:
Q  98 agagaactgatccatgtattgagctgaatgtgataaaggattcagatcaaatggtcatgttctccaaaccaaaaaagctcatctctcacatactaaagat 197  Q
    ||||||||| ||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||    
T  19790003 agagaactggtccatatgttgaggtgaatgtgataaaggattcagatcaaatggtcatgttctccaaaccaaaaaa-cttaactctcacatactaaagat 19790101  T
Q  198 tgctcacaaatattagttatactttcgttggtttttt 234  Q
    | |||||||||||||| ||| ||||| ||| ||||||    
T  19790102 ttctcacaaatattagatatgctttcattgttttttt 19790138  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 41324631 - 41324592
Alignment:
Q  122 tgaatgtgataaaggattcagatcaaatggtcatgttctc 161  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  41324631 tgaatgtgataaaggattcagatcacatggtcatgttctc 41324592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 47249691 - 47249730
Alignment:
Q  122 tgaatgtgataaaggattcagatcaaatggtcatgttctc 161  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  47249691 tgaatgtgataaaggattcagatcacatggtcatgttctc 47249730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 47249727 - 47249780
Alignment:
Q  181 tctcacatactaaagattgctcacaaatattagttatactttcgttggtttttt 234  Q
    ||||||||||||||||||||||||||||||||  ||| ||||| ||| ||||||    
T  47249727 tctcacatactaaagattgctcacaaatattatatatgctttcattgttttttt 47249780  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 41324595 - 41324541
Alignment:
Q  181 tctcacatactaaagattgctcacaaatattagttatactttcgttggttttttg 235  Q
    ||||||||||||| ||||||||||||||||||| ||| ||||  ||| |||||||    
T  41324595 tctcacatactaatgattgctcacaaatattagatatgcttttattgattttttg 41324541  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 32315679 - 32315559
Alignment:
Q  11 agcatagggatggaagtgtaccagaagtcttcgttatttgcaaaggagacattttcattagagaagatatgcaattatgaataattaagagaactgatcc 110  Q
    |||| ||||||||||| | || |||||||||| |||| | |||||||||||||||||||||||| |||||||||||||| |||||| ||||||||| |||    
T  32315679 agcagagggatggaagagcactagaagtcttcattatctacaaaggagacattttcattagagaggatatgcaattatggataattgagagaactggtcc 32315580  T
Q  111 atgtattgagctgaatgtgat 131  Q
    || | ||||| ||||||||||    
T  32315579 atatgttgaggtgaatgtgat 32315559  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 4845215 - 4845159
Alignment:
Q  122 tgaatgtgataaaggattcagatcaaatggtcatgttctccaaaccaaaaaagctca 178  Q
    |||||||||||| |||||||||||| || ||||||||| | ||| ||||||||||||    
T  4845215 tgaatgtgataatggattcagatcacatagtcatgttcactaaagcaaaaaagctca 4845159  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 25729996 - 25730102
Alignment:
Q  103 actgatccatgtattgagctgaatgtgataaaggattcagatcaaatggtcatgttctccaaaccaaaaaagctcatctctcacatactaaagattgctc 202  Q
    |||| ||||| | ||||| |||| |||||||| | ||||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||    
T  25729996 actggtccatatgttgaggtgaaagtgataaatggttcagatcatatggtcatgttctccaaaccaaaaaaactcacctctcacattctaaagattgctc 25730095  T
Q  203 acaaata 209  Q
    |||||||    
T  25730096 acaaata 25730102  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 20905237 - 20905184
Alignment:
Q  181 tctcacatactaaagattgctcacaaatattagttatactttcgttggtttttt 234  Q
    ||||||||||||| ||||||||||||||||||| ||| ||||  ||||||||||    
T  20905237 tctcacatactaatgattgctcacaaatattagatatgcttttattggtttttt 20905184  T

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