View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1511_high_137 (Length: 251)
Name: NF1511_high_137
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_137 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 23693307 - 23693087
Alignment:
| Q |
31 |
tagacatgtttatacaactaaatgtagttttaatacaatattcagcatttattttgaaatagttcaaaaattgtagaccagaacacagtttttcagcatt |
130 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23693307 |
tagatatgtttatacaactaaatgcagttttaatacaatattcagcatttattttgaaatagttcaaaaattgtagaccagaacacagtttttcagcatt |
23693208 |
T |
|
| Q |
131 |
ttcatcactaaaatttccaccatttcattttcagttgtaccaagcttgcctaaatcacaaggaaggtcttatcacgtggttactaaccaactaaacgtag |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23693207 |
ttcatcactaaaatttccaccatttcattttcagttgtaccaagcttgcctaaatcacaaggaaggtcttatcacgtggttactaaccaactaaacgtag |
23693108 |
T |
|
| Q |
231 |
tacaaaacaaaacatatacaa |
251 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23693107 |
tacaaaacaaaacatatacaa |
23693087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 23747497 - 23747421
Alignment:
| Q |
128 |
attttcatcactaaaatttccaccatttcattttcagttgtaccaagcttgcctaaatcacaaggaaggtcttatca |
204 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
23747497 |
attttcatcactgaaaattccaccatttcatttttagttgtaccaagcatgcctgaatcacaaggaaggtcttatca |
23747421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University