View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_high_140 (Length: 250)

Name: NF1511_high_140
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_high_140
NF1511_high_140
[»] chr8 (1 HSPs)
chr8 (10-250)||(1487931-1488170)
[»] chr3 (2 HSPs)
chr3 (10-133)||(50305997-50306120)
chr3 (165-250)||(50306121-50306208)
[»] chr2 (2 HSPs)
chr2 (10-133)||(26021385-26021508)
chr2 (165-250)||(26021509-26021596)
[»] chr1 (4 HSPs)
chr1 (10-133)||(3788886-3789009)
chr1 (165-250)||(3788798-3788885)
chr1 (35-81)||(51050928-51050974)
chr1 (143-201)||(51050827-51050884)
[»] chr6 (2 HSPs)
chr6 (35-81)||(23593511-23593557)
chr6 (143-201)||(23593601-23593659)
[»] chr4 (2 HSPs)
chr4 (143-201)||(28123872-28123930)
chr4 (35-78)||(28123782-28123825)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 1487931 - 1488170
Alignment:
Q  10 attattctaggaaagttgttttaacattattgagttgaaatgggtgaagttacaagcataagaaattttcgagagcaacctcgttcaagagccattgcaa 109  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||    
T  1487931 attattatgggaaagttgttttaacattattgagttgaaatgggtgaagttacaagcataagaaatttccaagagcaatctcgttcaagagccattgcaa 1488030  T
Q  110 tttgaagttcattgaaaactgtcaatggtaccgaaacaaacataaacaatggatttgggctcctttgtttgaagctataaagattgttttttctaacnnn 209  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       
T  1488031 tttgaagttcattgaaaactttc-atggtaccgaaacaaacataaacaatggatttgggcacctttgtttgaagctataaagattgttttttctaacttt 1488129  T
Q  210 nnnnaaattacaattcatgaaattgtttttaataattggtt 250  Q
        ||||||||| |||||||||||||||||||||||||||    
T  1488130 ttttaaattacaactcatgaaattgtttttaataattggtt 1488170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 50305997 - 50306120
Alignment:
Q  10 attattctaggaaagttgttttaacattattgagttgaaatgggtgaagttacaagcataagaaattttcgagagcaacctcgttcaagagccattgcaa 109  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  50305997 attattctgggaaagttgttttaacattattgcgttgaaatgggtgaagttacaagcataagaaatttccaagagcaacctcgttcaagagccattgcaa 50306096  T
Q  110 tttgaagttcattgaaaactgtca 133  Q
    ||||||||||||||||||||||||    
T  50306097 tttgaagttcattgaaaactgtca 50306120  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 50306121 - 50306208
Alignment:
Q  165 tgggctcctttgtttgaagctataaagattgttttttctaac--nnnnnnnaaattacaattcatgaaattgtttttaataattggtt 250  Q
    ||||| ||||||||||||||||||||||||||||||||||||         ||||||||| |||||||||||||||||||||||||||    
T  50306121 tgggcacctttgtttgaagctataaagattgttttttctaactttttttttaaattacaactcatgaaattgtttttaataattggtt 50306208  T

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Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 26021385 - 26021508
Alignment:
Q  10 attattctaggaaagttgttttaacattattgagttgaaatgggtgaagttacaagcataagaaattttcgagagcaacctcgttcaagagccattgcaa 109  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  26021385 attattctgggaaagttgttttaacattattgcgttgaaatgggtgaagttacaagcataagaaatttccaagagcaacctcgttcaagagccattgcaa 26021484  T
Q  110 tttgaagttcattgaaaactgtca 133  Q
    ||||||||||||||||||||||||    
T  26021485 tttgaagttcattgaaaactgtca 26021508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 26021509 - 26021596
Alignment:
Q  165 tgggctcctttgtttgaagctataaagattgttttttctaac--nnnnnnnaaattacaattcatgaaattgtttttaataattggtt 250  Q
    ||||| ||||||||||||||||||||||||||||||||||||         ||||||||| |||||||||||||||||||||||||||    
T  26021509 tgggcacctttgtttgaagctataaagattgttttttctaactttttttttaaattacaactcatgaaattgtttttaataattggtt 26021596  T

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Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 3789009 - 3788886
Alignment:
Q  10 attattctaggaaagttgttttaacattattgagttgaaatgggtgaagttacaagcataagaaattttcgagagcaacctcgttcaagagccattgcaa 109  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  3789009 attattctgggaaagttgttttaacattattgcgttgaaatgggtgaagttacaagcataagaaatttccaagagcaacctcgttcaagagccattgcaa 3788910  T
Q  110 tttgaagttcattgaaaactgtca 133  Q
    ||||||||||||||||||||||||    
T  3788909 tttgaagttcattgaaaactgtca 3788886  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 3788885 - 3788798
Alignment:
Q  165 tgggctcctttgtttgaagctataaagattgttttttctaac--nnnnnnnaaattacaattcatgaaattgtttttaataattggtt 250  Q
    ||||| ||||||||||||||||||||||||||||||||||||         ||||||||| |||||||||||||||||||||||||||    
T  3788885 tgggcacctttgtttgaagctataaagattgttttttctaactttttttttaaattacaactcatgaaattgtttttaataattggtt 3788798  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 51050974 - 51050928
Alignment:
Q  35 attattgagttgaaatgggtgaagttacaagcataagaaattttcga 81  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||    
T  51050974 attattgagttgaaataggtgaagttacaagcataaggaattttcga 51050928  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 51050884 - 51050827
Alignment:
Q  143 aaacaaacataaacaatggatttgggctcctttgtttgaagctataaagattgtttttt 201  Q
    ||||||||| ||||||||||||| || ||||||| |||||||||| ||||||| |||||    
T  51050884 aaacaaaca-aaacaatggatttaggttcctttgattgaagctatgaagattgattttt 51050827  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 23593511 - 23593557
Alignment:
Q  35 attattgagttgaaatgggtgaagttacaagcataagaaattttcga 81  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||    
T  23593511 attattgagttgaaataggtgaagttacaagcataaggaattttcga 23593557  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 23593601 - 23593659
Alignment:
Q  143 aaacaaacataaacaatggatttgggctcctttgtttgaagctataaagattgtttttt 201  Q
    |||||||| |||||||||||||| || ||||||| |||||||||| ||||||| |||||    
T  23593601 aaacaaacgtaaacaatggatttaggttcctttgattgaagctatgaagattgattttt 23593659  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 28123872 - 28123930
Alignment:
Q  143 aaacaaacataaacaatggatttgggctcctttgtttgaagctataaagattgtttttt 201  Q
    ||||||||||||||||||||||| || ||||||| |||||||||  ||||||| |||||    
T  28123872 aaacaaacataaacaatggatttaggttcctttgattgaagctaagaagattgattttt 28123930  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 28123782 - 28123825
Alignment:
Q  35 attattgagttgaaatgggtgaagttacaagcataagaaatttt 78  Q
    ||||||||||| |||| |||||||||||||||||||| ||||||    
T  28123782 attattgagtttaaataggtgaagttacaagcataaggaatttt 28123825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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