View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_141 (Length: 250)
Name: NF1511_high_141
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_141 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 85 - 240
Target Start/End: Complemental strand, 11531628 - 11531473
Alignment:
| Q |
85 |
cactattgtcggtatttccatcagaacgtgcaccataattgattacattgaaaagcttgttttgaatttgacggtgtgcttctgcaatacaaactagtaa |
184 |
Q |
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| T |
11531628 |
cactattgtcggtatttccatcagaacgtgcaccataattgatcacattgaaaagcttgttttgaatttgacggtgtgcttctgcaatacaaactagtaa |
11531529 |
T |
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| Q |
185 |
gctcaacacaaacaaaaattttgcacccatttttcagattttttatccaacctatg |
240 |
Q |
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| T |
11531528 |
gctcaacacaaacaaaaattttgcacccatttttcagattttttatccaacctatg |
11531473 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 26299108 - 26299037
Alignment:
| Q |
164 |
ttctgcaatacaaactagtaagctcaacacaaacaaaaattttgcacccatttttcagattttttatccaac |
235 |
Q |
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| T |
26299108 |
ttctacaatacaaactagcaagatcaagagaaacaaaacattttcacccatttttcagattatttatccaac |
26299037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 10978044 - 10978087
Alignment:
| Q |
81 |
accacactattgtcggtatttccatcagaacgtgcaccataatt |
124 |
Q |
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| T |
10978044 |
accacactattgtaggtattgctatcagaacgtgcaccataatt |
10978087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 10980382 - 10980459
Alignment:
| Q |
161 |
tgcttctgcaatacaaactagtaagctcaacacaaacaaaaattttgcaccca-tttttcagattttttatccaaccta |
238 |
Q |
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| T |
10980382 |
tgcttctg-aatacaaattggtaagctcaagacaaacaaaaaaattacacgcattttttcagatattttatccaaccta |
10980459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 13614520 - 13614455
Alignment:
| Q |
170 |
aatacaaactagtaagctcaacacaaacaaaaattttgcacccatttttcagattttttatccaac |
235 |
Q |
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| T |
13614520 |
aatataaactagcaagatcaagagaaacaaaacatttccacccatttttcagattatttatccaac |
13614455 |
T |
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