View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1511_high_144 (Length: 249)
Name: NF1511_high_144
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_144 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 1941075 - 1940837
Alignment:
| Q |
11 |
cagagagcgtaatagttatgatgatgtaaaaatcataatatattgtcatactctttgattaatggcggagatttgtttggcccaggagaggcagatgtgt |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1941075 |
cagagggcgtaatagttatgatgatgtaaaaatcataatatattgtcatactctttgattaatggcggagatttgttaggcccaggagaggcagatgtgt |
1940976 |
T |
|
| Q |
111 |
ctctcaagtgcaggaaatcaggcaggagtggatgcattctatagacagtagcaaattcctcagttaaagagtatggaacaccatgattttctgctctctt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1940975 |
ctctcaagtgcaggaaatcaggcaggagtggatgcattctatagacactagcaaattcctcagttaaagagtatggaacaccatgattttctgctctctt |
1940876 |
T |
|
| Q |
211 |
catgcccacaaatccactcaatatggagtttccggaatg |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1940875 |
catgcccacaaatccactcaatatggagtttccggaatg |
1940837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 227
Target Start/End: Complemental strand, 1955771 - 1955591
Alignment:
| Q |
47 |
aatatattgtcatactctttgattaatggcggagatttgtttggcccaggagaggcagatgtgtctctcaagtgcaggaaatcaggcaggagtggatgca |
146 |
Q |
| |
|
||||| ||| ||||||||||||| | ||| |||||||||||| | || || | ||||||| |||||||||| |||| ||||||| ||||||| ||||| |
|
|
| T |
1955771 |
aatattttggcatactctttgatcagtggtggagatttgttttgtcctggggtggcagatatgtctctcaaatgcaaagaatcaggtaggagtgcatgca |
1955672 |
T |
|
| Q |
147 |
ttctatagacagtagcaaattcctcagttaaagagtatggaacaccatgattttctgctctcttcatgcccacaaatccac |
227 |
Q |
| |
|
| ||||||||||| ||||||| ||||||| ||||||||||||||||||||| |||| | | ||||||||||| ||||||| |
|
|
| T |
1955671 |
tcctatagacagtcacaaattcttcagttagagagtatggaacaccatgattatctggttttttcatgcccaccaatccac |
1955591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 236
Target Start/End: Complemental strand, 1926893 - 1926754
Alignment:
| Q |
97 |
agaggcagatgtgtctctcaagtgcaggaaatcaggcaggagtggatgcattctatagacagtagcaaattcctcagttaaagagtatggaacaccatga |
196 |
Q |
| |
|
|||| ||||| |||| ||||| ||||| ||| || |||||| ||||||| ||||||||| | ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1926893 |
agagtcagatatgtccctcaaatgcagagaattgggtaggagttgatgcatcctatagacactcacaaattcctcagttaaagaatatggaacaccatga |
1926794 |
T |
|
| Q |
197 |
ttttctgctctcttcatgcccacaaatccactcaatatgg |
236 |
Q |
| |
|
|||| || | ||||||| ||||||||||||||||| |||| |
|
|
| T |
1926793 |
ttttttggtttcttcatacccacaaatccactcaagatgg |
1926754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University