View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_148 (Length: 248)
Name: NF1511_high_148
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_148 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 4 - 248
Target Start/End: Original strand, 19554024 - 19554286
Alignment:
| Q |
4 |
agtgagatgaatatagtcataaaatctatgaggtttatgaaggagaataattacgtaaaaggtttttaatttaatttttataagctaattaagtagaagg |
103 |
Q |
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| T |
19554024 |
agtgagaagaatatagtcataaaatctatgaggtttatgaaggagaataattacgtaacaggtttttaatttaatttttataagctaattaagtagaagg |
19554123 |
T |
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| Q |
104 |
taactaatcatt-nnnnnnnngtagaagataacaaactaagtttaatagtatctctgt-------------nnnnnnnnnctaaagtttaat----agta |
185 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||| |||||||| |||||||||||| |||| |
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| T |
19554124 |
taactaatcattaaaaaaaaagtagaaggtaacaaactaagtttaatagcatctctgtaaaataaaaaaaataaaaaaaactaaagtttaatagtaagta |
19554223 |
T |
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| Q |
186 |
cctcgtctcaaagaaaagtttaatagtacctgctaaagtatcaagtagtgtagacttgccaca |
248 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19554224 |
cctcgtttcaaagaaaagtttaatagtacctgctaaagtatcaagtagtgtagacttgccaca |
19554286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 37327091 - 37327044
Alignment:
| Q |
201 |
aagtttaatagtacctgctaaagtatcaagtagtgtagacttgccaca |
248 |
Q |
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| T |
37327091 |
aagtttaatagtacctgctaatgtatcaagtagtgtagacttgccaca |
37327044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 37315538 - 37315491
Alignment:
| Q |
201 |
aagtttaatagtacctgctaaagtatcaagtagtgtagacttgccaca |
248 |
Q |
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| T |
37315538 |
aagtttattagtacctgctaatgtatcaagtagtgtagacttgccaca |
37315491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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