View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1511_high_151 (Length: 245)
Name: NF1511_high_151
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_151 |
 | |
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| [»] scaffold0267 (1 HSPs) |
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| [»] scaffold0128 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 33637820 - 33638057
Alignment:
| Q |
1 |
tacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33637820 |
tacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtg |
33637919 |
T |
|
| Q |
101 |
ctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaactatc |
200 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33637920 |
ctaaccaattaacactaccattcacgaattgtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaactatc |
33638019 |
T |
|
| Q |
201 |
tcccatgcaatgaaccctcccctcccatttctgtgttg |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
33638020 |
tcccatgcaatgaaccctcccctcccatttctgtgttg |
33638057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 29124764 - 29124533
Alignment:
| Q |
1 |
tacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtg |
100 |
Q |
| |
|
|||||||| ||||||| ||||||||||| |||||||| | ||| || | || ||||||||||| ||| || |||||||||||||| | | ||||||| |
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| T |
29124764 |
tacttacatgcctccagccgcatatcaagtgataaaattattaactgatcgacaataacatttttcaattcattcatatgacaatttaagctatgacgtg |
29124665 |
T |
|
| Q |
101 |
ctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaactatc |
200 |
Q |
| |
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||||| | |||| ||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| || |
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|
| T |
29124664 |
ctaactagttaatactaccattcacgaatggtccaacaagagtgccttttggtagaattggaaaatcagggcaagcaagagtctttctccaacaactttc |
29124565 |
T |
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| Q |
201 |
tcccatgcaatgaaccctcccctcccatttct |
232 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| |
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|
| T |
29124564 |
acccatgcaatgaactctcccttcccatttct |
29124533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 199
Target Start/End: Complemental strand, 31669618 - 31669440
Alignment:
| Q |
21 |
catatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactacca |
120 |
Q |
| |
|
|||||||| ||||||||| ||||| |||| || | ||||||||| ||| || |||||| |||||| | | ||| |||||||| | |||| ||||||| |
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|
| T |
31669618 |
catatcaagcgataaaattactaagtggtcgacgataacattttgaaattcattcatatggaaatttaagctatgatgtgctaacaagttaatactacca |
31669519 |
T |
|
| Q |
121 |
ttcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaactat |
199 |
Q |
| |
|
|||||| |||||||||| | || | || |||| ||||||||||||||||||||||| ||||||||||||||| |||| |
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|
| T |
31669518 |
ttcacgaatggtccaacaaaagcgtcttttagtaaaattggaaaatcagggcaagcaaaagtctttctccaacatctat |
31669440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 40794307 - 40794507
Alignment:
| Q |
34 |
aaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtc |
133 |
Q |
| |
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|||| ||||||||| | |||||||||||||| ||||||||| || || |||| ||||||| |||||||| | ||||||||||| | || | |||||| |
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|
| T |
40794307 |
aaaaccactaattgttggatggtaacattttcccatttataatcattactgtttaagttgtgaagtgctaactagttaacactaccgtacatgaatggtc |
40794406 |
T |
|
| Q |
134 |
caacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaactatctcccatgcaatgaaccctcccctcccatttctg |
233 |
Q |
| |
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|| | ||| || |||||| ||||||| | ||||| ||| |||||||||| || ||||||| ||||| |||| ||||||||||||| ||| || |
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|
| T |
40794407 |
cattggaagt---tcatggtagaaatggaaaagtaaggcaatcaagagtctttctctaagaactatc-cccatacaataaaccctcccctccattttatg |
40794502 |
T |
|
| Q |
234 |
tgttg |
238 |
Q |
| |
|
||||| |
|
|
| T |
40794503 |
tgttg |
40794507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 3837807 - 3837593
Alignment:
| Q |
1 |
tacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtg |
100 |
Q |
| |
|
|||||||| |||||| | |||| ||||| ||| ||||||| ||| ||||||||||||||||||| || || ||||| ||||||||||| ||| ||| | |
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|
| T |
3837807 |
tacttacatgcctcctttcgcaaatcaagcgaaaaaatcaataactggttgatggtaacattttccctttcatacaaatgacaatttaagttatgatacg |
3837708 |
T |
|
| Q |
101 |
ctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaactatc |
200 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||| ||| | | |||| ||||||||||||| ||||||||| ||| ||||||||| ||||||| |
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|
| T |
3837707 |
ttaaccagttaacactaccattcacgaatggtccaacgatagtcctttgtagtaaaattggaaaatcatggcaagcaagagtatttctccaagaactatc |
3837608 |
T |
|
| Q |
201 |
tcccatgcaatgaac |
215 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3837607 |
gcccatgcaatgaac |
3837593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 13288 - 13074
Alignment:
| Q |
1 |
tacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtg |
100 |
Q |
| |
|
|||||||| | |||| | |||| ||||| ||| ||||||| ||| ||||| ||||||||||||| || || ||||| ||||||||||| ||| ||| | |
|
|
| T |
13288 |
tacttacatgtctcctttcgcaaatcaagcgaaaaaatcaataactggttaatggtaacattttccctttcatacaaatgacaatttaagttatgatacg |
13189 |
T |
|
| Q |
101 |
ctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaactatc |
200 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||| ||| | | |||| ||||||||||||| ||||||||| ||| ||||||||| ||||||| |
|
|
| T |
13188 |
ttaaccagttaacactaccattcagaaatggtccaacgatagtcctttgtagtaaaattggaaaatcatggcaagcaagagtatttctccaagaactatc |
13089 |
T |
|
| Q |
201 |
tcccatgcaatgaac |
215 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
13088 |
gcccatgcaatgaac |
13074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 238
Target Start/End: Original strand, 13784543 - 13784766
Alignment:
| Q |
12 |
ctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaatta |
111 |
Q |
| |
|
|||| |||||| ||||| || |||| ||||||||| | ||| |||| ||||| ||||||||| || || |||| ||||||| |||||||||| ||| |
|
|
| T |
13784543 |
ctccttccgcagatcaagtgaaaaaaccactaattgttggatagtaatattttcccatttataatcatcactgtttaagttgtgaagtgctaaccagtta |
13784642 |
T |
|
| Q |
112 |
acactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaactatctcccatgcaat |
211 |
Q |
| |
|
||||||||||||||| |||||||| | ||| | | ||||||||||||||| ||||||| | ||||||||||||||||||||||| ||||| |||| |
|
|
| T |
13784643 |
acactaccattcacgaatggtccattggaagttcgt---agtagaattggaaaagtagggcaatcgatagtctttctccaacaactatcacccatacaat |
13784739 |
T |
|
| Q |
212 |
gaaccctcccctcccatttctgtgttg |
238 |
Q |
| |
|
|||| ||||||||| ||| ||||||| |
|
|
| T |
13784740 |
gaactctcccctccattttatgtgttg |
13784766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 34195 - 34416
Alignment:
| Q |
1 |
tacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtg |
100 |
Q |
| |
|
|||||||| | |||| |||||| ||||| || |||| ||||||||| | |||||||||||||| ||||||||| || || |||| ||||||| ||| |
|
|
| T |
34195 |
tacttacatgtctccttccgcagatcaagtgaaaaaaccactaattgttggatggtaacattttcccatttataatcatcactgtttaagttgtgaagtg |
34294 |
T |
|
| Q |
101 |
ctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaactatc |
200 |
Q |
| |
|
||||||| |||||||| ||||||||| |||||||| | | | || ||||||||||||||| ||||||| | | ||||||||||||||||||||| |
|
|
| T |
34295 |
ctaaccagttaacactgccattcacgaatggtccattggaaat---tcgtagtagaattggaaaagtagggcaatcgagagtctttctccaacaactatc |
34391 |
T |
|
| Q |
201 |
tcccatgcaatgaaccctcccctcc |
225 |
Q |
| |
|
||||| || ||||| ||||||||| |
|
|
| T |
34392 |
acccatacagtgaactctcccctcc |
34416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 238
Target Start/End: Original strand, 29236 - 29417
Alignment:
| Q |
54 |
ggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagt |
153 |
Q |
| |
|
||||||||||| ||||||||| ||| ||| |||| ||| ||| |||||||||| |||||||||||||||||| |||||||| | ||| || ||| |
|
|
| T |
29236 |
ggtaacattttcccatttataattatcacagtttacgttttgaagtgctaaccagttaacactaccattcacgaatggtccattgcaagt---tcgtagt |
29332 |
T |
|
| Q |
154 |
agaattggaaaatcagggcaagcaatagtctttctccaacaactatctcccatgcaatgaaccctcccctcccatttctgtgttg |
238 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||||||||||||||| | ||| |||||||| ||||||||| ||| ||||||| |
|
|
| T |
29333 |
agaattggaaaagtagggcaatcgggagtctttctccaacaactatcactcatacaatgaactctcccctccattttatgtgttg |
29417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 20476292 - 20476358
Alignment:
| Q |
151 |
agtagaattggaaaatcagggcaagcaatagtctttctccaacaactatctcccatgcaatgaaccc |
217 |
Q |
| |
|
||||||||||||||| |||||| | ||| |||| ||||||||| |||| |||||||||||||||| |
|
|
| T |
20476292 |
agtagaattggaaaagtggggcaaactataatcttcctccaacaattatcacccatgcaatgaaccc |
20476358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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