View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_high_163 (Length: 238)

Name: NF1511_high_163
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_high_163
NF1511_high_163
[»] chr3 (6 HSPs)
chr3 (5-221)||(51107520-51107736)
chr3 (13-62)||(40966584-40966631)
chr3 (5-62)||(16024834-16024891)
chr3 (13-62)||(28260028-28260077)
chr3 (5-62)||(31989805-31989862)
chr3 (14-62)||(36473717-36473765)
[»] chr2 (6 HSPs)
chr2 (13-62)||(24895770-24895819)
chr2 (6-62)||(10439830-10439886)
chr2 (16-63)||(13057978-13058025)
chr2 (5-62)||(35665328-35665385)
chr2 (13-62)||(17642637-17642686)
chr2 (13-62)||(40948871-40948920)
[»] chr1 (4 HSPs)
chr1 (14-63)||(9117510-9117559)
chr1 (13-62)||(27086286-27086335)
chr1 (5-62)||(33261692-33261748)
chr1 (5-62)||(33281851-33281907)
[»] chr8 (1 HSPs)
chr8 (4-62)||(33657597-33657655)
[»] chr7 (4 HSPs)
chr7 (5-62)||(14584929-14584986)
chr7 (13-62)||(30219064-30219113)
chr7 (17-61)||(29956932-29956976)
chr7 (5-61)||(33998879-33998934)
[»] chr5 (3 HSPs)
chr5 (5-62)||(36600131-36600188)
chr5 (5-61)||(7630647-7630703)
chr5 (5-45)||(40971858-40971898)
[»] chr4 (2 HSPs)
chr4 (5-62)||(44340986-44341043)
chr4 (5-61)||(40154667-40154723)
[»] chr6 (1 HSPs)
chr6 (14-62)||(12754026-12754074)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 51107736 - 51107520
Alignment:
Q  5 tttttagcgactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaacagtaaaatttaacatcaaattttctagagataatattacata 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51107736 tttttagcgactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaacagtaaaatttaacatcaaattttctagagataatattacata 51107637  T
Q  105 aaattttaaatgaaaaatgattacgaataggtatgcattcaaatgttaaatattactctaccnnnnnnnntgttaaatattactatttgacattcaaaat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  51107636 aaattttaaatgaaaaatgattacgaataggtatgcattcaaatgttaaatattactctaccaaaaaaaatgttaaatattactatttgacattcaaaat 51107537  T
Q  205 tcatctcaatgttacac 221  Q
    |||||||||||||||||    
T  51107536 tcatctcaatgttacac 51107520  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 40966584 - 40966631
Alignment:
Q  13 gactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 62  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||||||||    
T  40966584 gactaaaatcaaaatttgttatatttttatggacaa--aacttatttaac 40966631  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 16024834 - 16024891
Alignment:
Q  5 tttttagcgactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 62  Q
    ||||||| |||||||||||||||||| ||||||| || |||| || ||||||||||||    
T  16024834 tttttagggactaaaatcaaaatttgatatatttatagggacgaataacttatttaac 16024891  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 28260028 - 28260077
Alignment:
Q  13 gactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 62  Q
    |||||||||||||||||| |||||||||| |||| || ||||||||||||    
T  28260028 gactaaaatcaaaatttgctatatttttagggacgaaaaacttatttaac 28260077  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 31989862 - 31989805
Alignment:
Q  5 tttttagcgactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 62  Q
    ||||||| ||||||||| |||||||| ||||||| || |||| || ||||||||||||    
T  31989862 tttttagggactaaaatgaaaatttgatatatttatatggacgaaaaacttatttaac 31989805  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 36473765 - 36473717
Alignment:
Q  14 actaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 62  Q
    |||||||||||||||||||| |||||||||||   | ||||||||||||    
T  36473765 actaaaatcaaaatttgttaaatttttaaggattgaaaacttatttaac 36473717  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 24895770 - 24895819
Alignment:
Q  13 gactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 62  Q
    |||||||||||||||||||||||||| ||||||| || ||||||||||||    
T  24895770 gactaaaatcaaaatttgttatatttgtaaggacgaaaaacttatttaac 24895819  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 10439830 - 10439886
Alignment:
Q  6 ttttagcgactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 62  Q
    |||||| |||||||||||||||||| |||||||||||  ||||| ||||||||||||    
T  10439830 ttttagggactaaaatcaaaatttgatatatttttaacaacaaaaaacttatttaac 10439886  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 13058025 - 13057978
Alignment:
Q  16 taaaatcaaaatttgttatatttttaaggacaaagaacttatttaaca 63  Q
    ||||||||||||||||||||||||||| |||||| | |||||||||||    
T  13058025 taaaatcaaaatttgttatatttttaaagacaaaaaccttatttaaca 13057978  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 35665385 - 35665328
Alignment:
Q  5 tttttagcgactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 62  Q
    ||||||| |||||||||||||||| | ||||||| ||||||| || ||||||||||||    
T  35665385 tttttagggactaaaatcaaaattcgctatatttataaggacgaaaaacttatttaac 35665328  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 17642637 - 17642686
Alignment:
Q  13 gactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 62  Q
    |||||||||||||||| | |||||||||| |||| || ||||||||||||    
T  17642637 gactaaaatcaaaattcgctatatttttagggacgaaaaacttatttaac 17642686  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 40948920 - 40948871
Alignment:
Q  13 gactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 62  Q
    ||||||||| |||||||||||||||| || ||| ||| ||||||||||||    
T  40948920 gactaaaataaaaatttgttatatttatagggataaaaaacttatttaac 40948871  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 9117510 - 9117559
Alignment:
Q  14 actaaaatcaaaatttgttatatttttaaggacaaagaacttatttaaca 63  Q
    ||||||||||||||||||||||||| || ||||||| |||||||||||||    
T  9117510 actaaaatcaaaatttgttatatttatagggacaaaaaacttatttaaca 9117559  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 27086286 - 27086335
Alignment:
Q  13 gactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 62  Q
    ||||||||||| |||||||||||||| ||||||  || ||||||||||||    
T  27086286 gactaaaatcagaatttgttatatttataaggatgaaaaacttatttaac 27086335  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 33261748 - 33261692
Alignment:
Q  5 tttttagcgactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 62  Q
    ||||||| |||||||||||||||||| ||| ||| ||||||| || ||||||||||||    
T  33261748 tttttagggactaaaatcaaaatttgatat-tttataaggacgaaaaacttatttaac 33261692  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 33281907 - 33281851
Alignment:
Q  5 tttttagcgactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 62  Q
    ||||||| |||||||||||||||||| ||| ||| ||||||| || ||||||||||||    
T  33281907 tttttagggactaaaatcaaaatttgatat-tttataaggacgaaaaacttatttaac 33281851  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 33657597 - 33657655
Alignment:
Q  4 ctttttagcgactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 62  Q
    ||||||||  ||||||||||||||| | ||||||||||||||| || || |||||||||    
T  33657597 ctttttaggaactaaaatcaaaattcgctatatttttaaggacgaaaaatttatttaac 33657655  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 14584986 - 14584929
Alignment:
Q  5 tttttagcgactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 62  Q
    ||||||| ||||||||||||||||| |||||||||||  ||| || || |||||||||    
T  14584986 tttttagggactaaaatcaaaatttattatatttttagagacgaaaaaattatttaac 14584929  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 30219064 - 30219113
Alignment:
Q  13 gactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 62  Q
    |||||||||||||||| | ||||||| ||||||| || ||||||||||||    
T  30219064 gactaaaatcaaaattcgctatatttataaggacgaaaaacttatttaac 30219113  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 29956932 - 29956976
Alignment:
Q  17 aaaatcaaaatttgttatatttttaaggacaaagaacttatttaa 61  Q
    |||||||||||||| | |||||||||||||||| ||| |||||||    
T  29956932 aaaatcaaaatttgctttatttttaaggacaaaaaacctatttaa 29956976  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 33998879 - 33998934
Alignment:
Q  5 tttttagcgactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaa 61  Q
    ||||||| |||||||||||||||||  ||||||| ||| |||||| |||||||||||    
T  33998879 tttttagggactaaaatcaaaatttaatatatttataaagacaaa-aacttatttaa 33998934  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 36600131 - 36600188
Alignment:
Q  5 tttttagcgactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 62  Q
    ||||||| |||||||||| ||||||  ||||||||||  ||| |||||||||||||||    
T  36600131 tttttagggactaaaatccaaatttactatatttttagagaccaagaacttatttaac 36600188  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 7630647 - 7630703
Alignment:
Q  5 tttttagcgactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaa 61  Q
    ||||||| |||||||||||||||||| ||||||| ||  ||| || |||||||||||    
T  7630647 tttttagggactaaaatcaaaatttgatatatttatagagacgaaaaacttatttaa 7630703  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 40971898 - 40971858
Alignment:
Q  5 tttttagcgactaaaatcaaaatttgttatatttttaagga 45  Q
    ||||||| ||||||||||||||||| |||||||| ||||||    
T  40971898 tttttagggactaaaatcaaaatttattatatttataagga 40971858  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 44340986 - 44341043
Alignment:
Q  5 tttttagcgactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 62  Q
    ||||||| ||||||||||| |||| ||||| ||||| ||||| || ||||||||||||    
T  44340986 tttttagggactaaaatcagaattcgttatgttttttaggacgaaaaacttatttaac 44341043  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 40154667 - 40154723
Alignment:
Q  5 tttttagcgactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaa 61  Q
    ||||||| ||||||||||||| |||| ||||||| || |||| || |||||||||||    
T  40154667 tttttagagactaaaatcaaattttgatatatttatagggacgaaaaacttatttaa 40154723  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 12754074 - 12754026
Alignment:
Q  14 actaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 62  Q
    ||||||||||||||| | || |||||||||||| || ||||||||||||    
T  12754074 actaaaatcaaaattcgctaaatttttaaggacgaaaaacttatttaac 12754026  T

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