View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_166 (Length: 237)
Name: NF1511_high_166
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_166 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1672147 - 1672374
Alignment:
| Q |
1 |
ttcatacttgcaatgagaattataacaccagcatatgtgtcaacatggttagattagaaagatgtttttgtcattgtccacatactaacatgcatg---- |
96 |
Q |
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| T |
1672147 |
ttcatacttgcaatgagaattataacaccagcatatgtgtcaacatggttagattagaaagatgtttttataattgtccgcatactaacatgcataatat |
1672246 |
T |
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| Q |
97 |
ttaggattcgtctaaactgtagttttcagcagaataataaaactgtcatggaatggtgaaacatatatgagctagtatgcactgtcaaatagttttacaa |
196 |
Q |
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| T |
1672247 |
ttaggattcgtctaaactgtagttttcagcagaataataaaactgtcatggaatggtgaaacatatatgagctagtatgcactgtcaaatagttttacaa |
1672346 |
T |
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| Q |
197 |
ttcgtaatatttgtggaacatactcttc |
224 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
1672347 |
ttcgtaatatttgtggaacatactcttc |
1672374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 21124912 - 21124875
Alignment:
| Q |
189 |
ttttacaattcgtaatatttgtggaacatactcttcat |
226 |
Q |
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| T |
21124912 |
ttttacaattcgtaatatttgtggaacatactcctcat |
21124875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 16398824 - 16398667
Alignment:
| Q |
1 |
ttcatacttgcaatgagaattataacaccagcatatgtgtcaacatggttagattagaaagatgtttttgtcattgtccacatactaacatgcat-gtta |
99 |
Q |
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| T |
16398824 |
ttcatacttggagtgagaattaccacaccagcatatgtgtcaacatagttagattagaaagatgttttcataattgtccaaacactaacatacatattta |
16398725 |
T |
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| Q |
100 |
ggattcgtctaaactgt---agttttcagcagaataataaaactgtcatggaatggtg |
154 |
Q |
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| T |
16398724 |
ggattcgtcaaaactgtttgagttttcagcggaataataaaattttcatggaatggtg |
16398667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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