View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_high_171 (Length: 235)

Name: NF1511_high_171
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_high_171
NF1511_high_171
[»] chr4 (3 HSPs)
chr4 (1-221)||(11345925-11346145)
chr4 (91-218)||(51305262-51305388)
chr4 (81-218)||(47491998-47492135)
[»] chr1 (2 HSPs)
chr1 (70-221)||(15504205-15504356)
chr1 (79-219)||(17302306-17302446)
[»] chr7 (2 HSPs)
chr7 (120-218)||(19562103-19562202)
chr7 (139-219)||(44701546-44701626)
[»] chr8 (1 HSPs)
chr8 (91-221)||(10517600-10517731)
[»] chr5 (2 HSPs)
chr5 (80-221)||(1299423-1299564)
chr5 (149-221)||(3003693-3003765)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 11345925 - 11346145
Alignment:
Q  1 ccttttagcgaacatttgaactcaagtcgcatccaaactatgcaactttagctgaatcgctttagttactcttggtgttcgtttggtttggcggtggttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||    
T  11345925 ccttttagcgaacatttgaactcaagtcgcatccaaactattcaactttagctgaaacgctttagttacacttagtgttcgtttggtttggcggtggttt 11346024  T
Q  101 ttataaaatcacggtaagttttcatgtttctacaaaagcttgcttttgtagcttcaggattttcacgtctagtttgccttgggacatgatattttccctg 200  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| || |||||||||||  | ||    
T  11346025 ttataaaatcacggtaagtttccatgtttctacaaaaccttgcttttgtagcttcaggattttcacgtctagcttgcctcggaacatgatatttgtcttg 11346124  T
Q  201 caaaagctaatccaaacacat 221  Q
    |||||||||||||||||||||    
T  11346125 caaaagctaatccaaacacat 11346145  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 91 - 218
Target Start/End: Original strand, 51305262 - 51305388
Alignment:
Q  91 gcggtggtttttataaaatcacggtaagttttcatgtttctacaaaagcttgcttttgtagcttcaggattttcacgtctagtttgccttgggacatgat 190  Q
    ||||||||||||  | ||||||||| | |||||||||||  |||||| |||| |||| ||| || || |||||||| || |  |||||| ||||| ||||    
T  51305262 gcggtggttttttaagaatcacggtgaattttcatgttttcacaaaaacttgttttt-tagtttgagaattttcacatccaacttgcctcgggacgtgat 51305360  T
Q  191 attttccctgcaaaagctaatccaaaca 218  Q
    |||||| |||||||||||||||||||||    
T  51305361 attttcactgcaaaagctaatccaaaca 51305388  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 218
Target Start/End: Complemental strand, 47492135 - 47491998
Alignment:
Q  81 gtttggtttggcggtggtttttataaaatcacggtaagttttcatgtttctacaaaagcttgcttttgtagcttcaggattttcacgtctagtttgcctt 180  Q
    |||||||||  |||||||||||| | ||| |||||   |||||| ||||  |||||| ||| |||||||| ||||||||||| || ||| || ||||||     
T  47492135 gtttggtttaacggtggtttttaaagaattacggtggattttcacgttttcacaaaatcttacttttgtaacttcaggatttccatgtccagcttgcctc 47492036  T
Q  181 gggacatgatattttccctgcaaaagctaatccaaaca 218  Q
      ||| |||||||| ||||||||||| |||||||||||    
T  47492035 tagacgtgatatttgccctgcaaaagttaatccaaaca 47491998  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 70 - 221
Target Start/End: Complemental strand, 15504356 - 15504205
Alignment:
Q  70 tcttggtgttcgtttggtttggcggtggtttttataaaatcacggtaagttttcatgtttctacaaaagcttgcttttgtagcttcaggattttcacgtc 169  Q
    |||| ||| ||||||||||| |||||||||  || |||||||||||   |||||| ||||  |||||||||| |||||||||||||||||||| ||||||    
T  15504356 tcttagtgctcgtttggtttagcggtggttactagaaaatcacggtggattttcacgttttcacaaaagcttacttttgtagcttcaggatttccacgtc 15504257  T
Q  170 tagtttgccttgggacatgatattttccctgcaaaagctaatccaaacacat 221  Q
     || || ||| |  || |||||||| | ||| ||||||||||||||||||||    
T  15504256 cagcttacctcgaaacgtgatatttgcactgtaaaagctaatccaaacacat 15504205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 17302446 - 17302306
Alignment:
Q  79 tcgtttggtttggcggtggtttttataaaatcacggtaagttttcatgtttctacaaaagcttgcttttgtagcttcaggattttcacgtctagtttgcc 178  Q
    ||||||||||| |||||||||| | || |||||| || | |||||| ||||  ||||||||||||||||||||||| || |||| |||||| || |||||    
T  17302446 tcgtttggtttagcggtggtttctgtagaatcacagtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtcaagcttgcc 17302347  T
Q  179 ttgggacatgatattttccctgcaaaagctaatccaaacac 219  Q
      ||||  |||||||| |  |||||||||||||||||||||    
T  17302346 ccgggatgtgatatttgcattgcaaaagctaatccaaacac 17302306  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 19562103 - 19562202
Alignment:
Q  120 tttcatgtttctacaaaagcttgctttt-gtagcttcaggattttcacgtctagtttgccttgggacatgatattttccctgcaaaagctaatccaaaca 218  Q
    |||||||||| ||||||||||| ||||| ||||||| |||||||||| |||||  ||| || |||||||||||||| || ||||||||||||||||||||    
T  19562103 tttcatgtttttacaaaagcttactttttgtagctttaggattttcaggtctaacttgtctcgggacatgatatttgccatgcaaaagctaatccaaaca 19562202  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 44701546 - 44701626
Alignment:
Q  139 cttgcttttgtagcttcaggattttcacgtctagtttgccttgggacatgatattttccctgcaaaagctaatccaaacac 219  Q
    ||||||||||||  || ||||||| |||||| || ||  || ||||| |||||||| | ||||||||||||||||||||||    
T  44701546 cttgcttttgtacttttaggatttccacgtccagcttaactcgggacgtgatatttacactgcaaaagctaatccaaacac 44701626  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 91 - 221
Target Start/End: Complemental strand, 10517731 - 10517600
Alignment:
Q  91 gcggtggtttttataaaatcacggtaagttttcatgt-ttctacaaaagcttgcttttgtagcttcaggattttcacgtctagtttgccttgggacatga 189  Q
    |||||||||||| |||||||||||||| ||||||||  || |||||||| || |||||||||||||| |||||| || ||||| || |||  |||  |||    
T  10517731 gcggtggtttttctaaaatcacggtaaattttcatggcttttacaaaagtttacttttgtagcttcaagatttttacatctagcttacctcaggatgtga 10517632  T
Q  190 tattttccctgcaaaagctaatccaaacacat 221  Q
    ||||| || ||| |||| ||||||||||||||    
T  10517631 tatttgccttgcgaaagttaatccaaacacat 10517600  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 1299423 - 1299564
Alignment:
Q  80 cgtttggtttggcggtggtttttataaaatcacggtaagttttcatgtttctacaaaagcttgcttttgtagcttcaggattttcacgtctagtttgcct 179  Q
    |||||||||| || |||||||||| ||||||   || | |||||| ||||  | |||||||| ||||||||| |||   |||||||  || |  ||||||    
T  1299423 cgtttggtttagcagtggtttttaaaaaatcgtagtgaattttcacgttttcataaaagcttacttttgtagtttcgatattttcatatcaaacttgcct 1299522  T
Q  180 tgggacatgatattttccctgcaaaagctaatccaaacacat 221  Q
    |||||  ||||||||   |||||||| |||||||||||||||    
T  1299523 tgggatttgatatttgtactgcaaaaactaatccaaacacat 1299564  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 3003693 - 3003765
Alignment:
Q  149 tagcttcaggattttcacgtctagtttgccttgggacatgatattttccctgcaaaagctaatccaaacacat 221  Q
    |||| ||| |||||||| ||| || |||||| ||||| ||| |||| |  |||||||||||||||||||||||    
T  3003693 tagcctcacgattttcatgtccagcttgcctcgggacgtgaaatttccagtgcaaaagctaatccaaacacat 3003765  T

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