View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_177 (Length: 233)
Name: NF1511_high_177
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_177 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 3803035 - 3803250
Alignment:
| Q |
5 |
ccttctcttccggcttaacatgtttaagccgtacaaactctgttgcaccagctgcgaccattgcaaacattccgataactaggccaactcccattctttg |
104 |
Q |
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| T |
3803035 |
ccttctcttccggcttaacatgtttaagccgtacaaactctgttgcaccagctgcgaccattgcaaacattccgataactaggccaactcccattctttg |
3803134 |
T |
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| Q |
105 |
aagttcgcttaaccccttaggattaccgcttaattttccggccaggggaacaagaacttggcgataaagtccagtacatacaaggacactacctatatca |
204 |
Q |
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| T |
3803135 |
aagttcacttaaccccttaggattaccgcttaattttccggccaagggaacaagaacttggcgataaagtccagtacatacaaggacactacctatatca |
3803234 |
T |
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| Q |
205 |
aacacagacatggttg |
220 |
Q |
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| T |
3803235 |
aacacagacatggttg |
3803250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 397738 - 397534
Alignment:
| Q |
16 |
ggcttaacatgtttaagccgtacaaactctgttgcaccagctgcgaccattgcaaacattccgataactaggccaactcccattctttgaagttcgctta |
115 |
Q |
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|||| ||| |||||||||| | ||||||| ||| |||||||||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
397738 |
ggctgaacttgtttaagcctttcaaactccgttacaccagctgcaaccatcgcaagcattccaataactaggccaactcccattctttgaagttcgctta |
397639 |
T |
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| Q |
116 |
accccttaggattaccgcttaattttccggccaggggaacaagaacttggcgataaagtccagtacatacaaggacactacctatatcaaacacagacat |
215 |
Q |
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||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| |
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| T |
397638 |
accccttaggattaccgcttaattttccggccaagggaactagaacttggcgataaagtccagtgcatacaaggacactgcatatatcaaacacagacat |
397539 |
T |
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| Q |
216 |
ggttg |
220 |
Q |
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||||| |
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| T |
397538 |
ggttg |
397534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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