View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_178 (Length: 233)
Name: NF1511_high_178
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_178 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 9679080 - 9679302
Alignment:
| Q |
11 |
acaatattaaagatcacaacgcaactgtggcgcaactgcaagcattattgaaaacatggtattaccgcctttttgtctcctcccccacctccctcattat |
110 |
Q |
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| T |
9679080 |
acaatattaaagatcacaacgcaagtgtggcgcaactgcaagcattattgaaaacatggtagtaccgcctttttgtctcctcccccacctccctcattat |
9679179 |
T |
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| Q |
111 |
tttttcttgcacttaaaactttctcatatttgtatctaacaaaagtttgttgttgatgttgtagtttggtttattggacccaccaaacattttctatcaa |
210 |
Q |
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| T |
9679180 |
cttttcttgcacttaaaactttctcatatttgtatctaacaaaagtttgttgttgatgttgtagtttggtttattggacccaccaaacattttctatcaa |
9679279 |
T |
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| Q |
211 |
gtccaagaaaatggaaatagcaa |
233 |
Q |
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| T |
9679280 |
gtccaagaaaatggaaatagcaa |
9679302 |
T |
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