View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_high_179 (Length: 232)

Name: NF1511_high_179
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_high_179
NF1511_high_179
[»] chr7 (8 HSPs)
chr7 (1-220)||(17736948-17737167)
chr7 (3-162)||(17708713-17708872)
chr7 (12-162)||(16730588-16730738)
chr7 (1-158)||(17736365-17736522)
chr7 (1-148)||(17718535-17718682)
chr7 (1-158)||(17699602-17699759)
chr7 (3-158)||(16722590-16722745)
chr7 (113-162)||(17714184-17714233)
[»] chr3 (7 HSPs)
chr3 (3-104)||(46480224-46480325)
chr3 (12-96)||(5160717-5160801)
chr3 (3-105)||(46491137-46491239)
chr3 (3-85)||(51944321-51944403)
chr3 (3-96)||(5156676-5156769)
chr3 (4-93)||(46498380-46498469)
chr3 (3-92)||(46544915-46545004)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 17736948 - 17737167
Alignment:
Q  1 tcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttg 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17736948 tcgactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttg 17737047  T
Q  101 atttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaatatataaatggggtaaatgatgtcctattccatattcgta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17737048 atttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaatatataaatggggtaaattatgtcctattccatattcgta 17737147  T
Q  201 tactatctaaaatatatttt 220  Q
    |||||||| |||||||||||    
T  17737148 tactatctgaaatatatttt 17737167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 3 - 162
Target Start/End: Original strand, 17708713 - 17708872
Alignment:
Q  3 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgat 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17708713 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgat 17708812  T
Q  103 ttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaata 162  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17708813 tgttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaata 17708872  T

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Target: chr7; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 16730588 - 16730738
Alignment:
Q  12 gctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgatttttgaatt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16730588 gctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgattgttgaatt 16730687  T
Q  112 ccatagtatcttaaatatgttttctaagcaacccatttttatattttaata 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16730688 ccatagtatcttaaatatgttttctaagcaacccatttttatattttaata 16730738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 17736365 - 17736522
Alignment:
Q  1 tcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17736365 tcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttg 17736464  T
Q  101 atttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatatttt 158  Q
    ||| |||||||||||||||||| |||||||||||||||  |||||||||| |||||||    
T  17736465 attgttgaattccatagtatctcaaatatgttttctaaataacccattttcatatttt 17736522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 17718535 - 17718682
Alignment:
Q  1 tcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttg 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17718535 tcgactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttg 17718634  T
Q  101 atttttgaattccatagtatcttaaatatgttttctaagcaacccatt 148  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  17718635 attcttgaattccatagcatcttaaatatgttttctaagcaacccatt 17718682  T

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Target: chr7; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 17699602 - 17699759
Alignment:
Q  1 tcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttg 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  17699602 tcgactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggtta 17699701  T
Q  101 atttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatatttt 158  Q
    ||| |||||||||||||||||| |||||||||||||||  || |||||||||||||||    
T  17699702 attgttgaattccatagtatctcaaatatgttttctaaataatccatttttatatttt 17699759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 16722590 - 16722745
Alignment:
Q  3 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgat 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  16722590 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttaat 16722689  T
Q  103 ttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatatttt 158  Q
    | |||||||||||||||||| |||||||||||||||  || ||||||| |||||||    
T  16722690 tgttgaattccatagtatctcaaatatgttttctaaataaaccattttaatatttt 16722745  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 17714184 - 17714233
Alignment:
Q  113 catagtatcttaaatatgttttctaagcaacccatttttatattttaata 162  Q
    |||||||||| |||||||| || |||||||||||||||||| ||||||||    
T  17714184 catagtatctcaaatatgtcttataagcaacccatttttatgttttaata 17714233  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 46480224 - 46480325
Alignment:
Q  3 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgat 102  Q
    |||||||| |||||||||||||| |||||| |||| |||||||| || |  ||||| ||  ||||||||||| ||||| |||||||||||| ||| ||||    
T  46480224 gactttgtagctgaccaccctttcttatttatgattagagaagacttgaccggaacaatcatctttgttggacaggtgctcaatcctcttgctgggtgat 46480323  T
Q  103 tt 104  Q
    ||    
T  46480324 tt 46480325  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 5160717 - 5160801
Alignment:
Q  12 gctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatg 96  Q
    |||||||||||||| ||||||||||| |||||||| |  | ||||||||| |||||||||||| | ||  |||||||||||||||    
T  5160717 gctgaccaccctttcttatttctgattagagaagattggactggaaccattctctttgttggacaagtactcaatcctcttgatg 5160801  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 46491137 - 46491239
Alignment:
Q  3 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgat 102  Q
    |||||||| |||| ||||||||| || ||| |||| |||||||| || | |||||| ||  ||||||||||| ||||| |||||||||||| ||| ||||    
T  46491137 gactttgtggctggccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgctgggtgat 46491236  T
Q  103 ttt 105  Q
    |||    
T  46491237 ttt 46491239  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 51944321 - 51944403
Alignment:
Q  3 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaa 85  Q
    |||||||| |||||||||||||| ||||||||||| |||||||| || | |||||| ||  ||||||||||| ||||| ||||    
T  51944321 gactttgtagctgaccaccctttcttatttctgattagagaagatttgactggaacaatcatctttgttggacaggtgctcaa 51944403  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 5156676 - 5156769
Alignment:
Q  3 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatg 96  Q
    |||||||| ||||| |||||||| |||||||| || |||||| | |  | ||||||||| |||||||||||| | ||| ||||||| |||||||    
T  5156676 gactttgtagctgatcaccctttcttatttctaattagagaaaactcgactggaaccattctctttgttggacaagtgctcaatccacttgatg 5156769  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 46498380 - 46498469
Alignment:
Q  4 actttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttg 93  Q
    ||||||| ||||||||||| || |||||| | ||||||||||| || |  ||||| ||  ||||||||||  ||||| ||||||||||||    
T  46498380 actttgtagctgaccacccattcttatttattatcagagaagatttgaccggaactatcgtctttgttgggcaggtgctcaatcctcttg 46498469  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 46544915 - 46545004
Alignment:
Q  3 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctctt 92  Q
    |||||||| |||||||||||||| || ||| ||||||||||||| ||   ||||||  |||||||| ||||| | ||  |||||||||||    
T  46544915 gactttgtagctgaccaccctttcttgtttttgatcagagaagatttgtctggaacggtactctttattggacaagttctcaatcctctt 46545004  T

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