View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_185 (Length: 223)
Name: NF1511_high_185
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_185 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 37922311 - 37922524
Alignment:
| Q |
1 |
ccaaagaaaagcaccaagagcaatgacatgtgcacgattgtgtcgtgtgacaaggtaagcagcaagagggtaacagaatgcttgaaccagggatcggaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37922311 |
ccaaagaaaagcaccaagagcaatgacatgtgcacgattgtgtcgtgtggcaaggtaagcagcaagagggtaacagaatgcttgaaccagggatcggaaa |
37922410 |
T |
|
| Q |
101 |
agagtgagagaagtgaacgcagtggggtcagcgttaagttcagcaccaatctcattgtagactccaggtaacagtgacgcatcagctcactccgtaatac |
200 |
Q |
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|||||||||||| |||||||| ||||||||||| |||||| |||||||||| ||||| ||||| ||||||| |||| ||||||||| |||| |||||| |
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| T |
37922411 |
agagtgagagaacctaacgcagttgggtcagcgttgagttcatcaccaatctctttgtatactcctggtaacaatgactcatcagctctctccataatac |
37922510 |
T |
|
| Q |
201 |
ctgggagatttacc |
214 |
Q |
| |
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||| ||||||||| |
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|
| T |
37922511 |
ctgctagatttacc |
37922524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 37925894 - 37926107
Alignment:
| Q |
1 |
ccaaagaaaagcaccaagagcaatgacatgtgcacgattgtgtcgtgtgacaaggtaagcagcaagagggtaacagaatgcttgaaccagggatcggaaa |
100 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||| ||| | ||||||||||| |||||||||||||||| |||||| |||||||||||| |
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| T |
37925894 |
ccaaagaaaagcacctagagcaataacatgtgcacgattgtgtcgcgtggccaggtaagcagccagagggtaacagaatgattgaacaagggatcggaaa |
37925993 |
T |
|
| Q |
101 |
agagtgagagaagtgaacgcagtggggtcagcgttaagttcagcaccaatctcattgtagactccaggtaacagtgacgcatcagctcactccgtaatac |
200 |
Q |
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|||||||| ||| |||||||| || |||||||||||||||||||||| ||| ||||| ||||| || | || |||| ||||||||| || | |||||| |
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| T |
37925994 |
agagtgagggaacctaacgcagttggatcagcgttaagttcagcaccaacctctttgtatactcctggaagcaatgactcatcagctctctgcataatac |
37926093 |
T |
|
| Q |
201 |
ctgggagatttacc |
214 |
Q |
| |
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|| ||||||||| |
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|
| T |
37926094 |
ttgctagatttacc |
37926107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 37937585 - 37937787
Alignment:
| Q |
1 |
ccaaagaaaagcaccaagagcaatgacatgtgcacgattgtgtcgtgtgacaaggtaagcagcaagagggtaacagaatgcttgaaccagggatcggaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||| || ||| | ||||||| |||||||||||||||||||| |||||| || ||||||||| |
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| T |
37937585 |
ccaaagaaaagcaccaagagcaataacatgtgaacgattgtaacgggtggcgaggtaagtagcaagagggtaacagaatgattgaacaagtgatcggaaa |
37937684 |
T |
|
| Q |
101 |
agagtgagagaagtgaacgcagtggggtcagcgttaagttcagcaccaatctcattgtagactccaggtaacagtgacgcatcagctcactccgtaatac |
200 |
Q |
| |
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|||||||||||| || || ||||||||||||||||| ||||||| | || ||||| ||||||||||||| ||| |||| |||| ||| |||||| |
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| T |
37937685 |
agagtgagagaacctaaggcggtggggtcagcgttaagagcagcaccgacttctttgtatactccaggtaacaatgattcatcggctcgttccataatac |
37937784 |
T |
|
| Q |
201 |
ctg |
203 |
Q |
| |
|
||| |
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|
| T |
37937785 |
ctg |
37937787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 26285282 - 26285244
Alignment:
| Q |
1 |
ccaaagaaaagcaccaagagcaatgacatgtgcacgatt |
39 |
Q |
| |
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|||||||||||||||||||||||| ||||| |||||||| |
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| T |
26285282 |
ccaaagaaaagcaccaagagcaataacatgagcacgatt |
26285244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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