View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_19 (Length: 545)
Name: NF1511_high_19
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_19 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 15 - 527
Target Start/End: Complemental strand, 23614 - 23102
Alignment:
| Q |
15 |
cagagactagcctaccattctttagcaacctatctcccaattttttcacccagtttgcatcagggatgagcaaaaggtaaatgtctttgagattataaat |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23614 |
cagagactagcctaccattctttagcaacctatctcccaattttttcacccagtttgcatcagggatgagcaaaaggtaaacgtctttgagattataaat |
23515 |
T |
|
| Q |
115 |
ctgcttctgaacacccaaataattgaatgcaaactttacataactgcaatgctgatgaggctcttgaggtttgaaatttgaaagggattctagcatatga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23514 |
ctgcttctgaacacccaaataattgaatgcaaactttacataactgcaatgctgatgaggctcttgaggtttgaaatttgaaagggattctagcatatga |
23415 |
T |
|
| Q |
215 |
acaatgttatccttccaacatgtccaacaataaaacaatgtctccacggaaaaatgatttttcaaaatcatgccttcaacagaaacatctaacatattgt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23414 |
acaatgttatccttccaacatgtccaacaataaaacaatgtctccacggaaaaatgatttttcaaaatcatgccttcaacagaaacatctaacatattgt |
23315 |
T |
|
| Q |
315 |
cttgccatacatacttagaggtgttcatacgaaaatgagaatccagcagtttcctcaaacataatattccccctcggatactcccatggatgcgagaaga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23314 |
cttgccatacatacttagaggtgttcatacgaaaatgagaatccagcagtttcctcaaacataatatttcccctcggatactcccatggatgcgagaaga |
23215 |
T |
|
| Q |
415 |
tttcaactgattcattatttcaaaaatgttatcatgctcatttgatagtatttcagcttctgtggatgcaagctcataaaagctgtttgacacttccttt |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23214 |
tttcaactgattcattatttcaaaaatgttatcatgctcatttgatagtatttcagcttctgtggatgcaagctcataaaagctgtttgacacttccttt |
23115 |
T |
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| Q |
515 |
gcaaatgccaacg |
527 |
Q |
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||||||||||||| |
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| T |
23114 |
gcaaatgccaacg |
23102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 129 - 527
Target Start/End: Original strand, 34602040 - 34602438
Alignment:
| Q |
129 |
ccaaataattgaatgcaaactttacataactgcaatgctgatgaggctcttgaggtttgaaatttgaaagggattctagcatatgaacaatgttatcctt |
228 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34602040 |
ccaaataattcaatgcaaactttacataactgctatgctgatgaggctcttgaactttgaaatttgaaagggattctagcatatgaacaatgttatcctt |
34602139 |
T |
|
| Q |
229 |
ccaacatgtccaacaataaaacaatgtctccacggaaaaatgatttttcaaaatcatgccttcaacagaaacatctaacatattgtcttgccatacatac |
328 |
Q |
| |
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||||||||| |||| |||||||||||||||||||||||| ||||| |||| |||||||||||| ||||||||||| |||| |||||||||| |||||| |
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| T |
34602140 |
ccaacatgttcaactataaaacaatgtctccacggaaaattgattcttcataatcatgccttcgacagaaacatcaaacaagctgtcttgccagacatac |
34602239 |
T |
|
| Q |
329 |
ttagaggtgttcatacgaaaatgagaatccagcagtttcctcaaacataatattccccctcggatactcccatggatgcgagaagatttcaactgattca |
428 |
Q |
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||||||| ||| | ||||||||||||||||||||||||| ||||||||||||| |||||| |||||| | || ||||||||||||||||| ||||||| |
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| T |
34602240 |
ttagaggagtttagccgaaaatgagaatccagcagtttccacaaacataatatttcccctctgatacttctataaatgcgagaagatttcaattgattca |
34602339 |
T |
|
| Q |
429 |
ttatttcaaaaatgttatcatgctcatttgatagtatttcagcttctgtggatgcaagctcataaaagctgtttgacacttcctttgcaaatgccaacg |
527 |
Q |
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||||||||||||| |||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||| |
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| T |
34602340 |
ttatttcaaaaatattatcatgcttatttgatagtctttcaacttctgtggatgcaagctcataaaagctgcttgacactacctttgcaaatgtcaacg |
34602438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 8e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 238 - 521
Target Start/End: Complemental strand, 28398500 - 28398220
Alignment:
| Q |
238 |
ccaacaataaaacaatgtctccacggaaaaatgatttttcaaaatcatgccttcaacagaaacatctaacatattgtcttgccatacatacttagaggtg |
337 |
Q |
| |
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||||||| ||||||||||||||||||||| ||||| |||| |||||||||||| ||||||||||| |||||| |||||||||| |||||||| |||| | |
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| T |
28398500 |
ccaacaacaaaacaatgtctccacggaaagttgattcttcataatcatgccttcgacagaaacatcaaacatactgtcttgccagacatactttgaggag |
28398401 |
T |
|
| Q |
338 |
ttcatacgaaaatgagaatccagcagtttcctcaaacataatattccccctcggatactcccatggatgcgagaagatttcaactgattcattatttcaa |
437 |
Q |
| |
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|| | |||||||||||||||||||||| || ||||||||||||| |||||| |||||| | ||| ||||||||||||||||| ||||||| |||||||| |
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| T |
28398400 |
tttaaccgaaaatgagaatccagcagttcccacaaacataatatttcccctctgatactgctatgaatgcgagaagatttcaattgattcactatttcaa |
28398301 |
T |
|
| Q |
438 |
aaatgttatcatgctcatttgatagtatttcagcttctgtggatgcaagctcataaaagctgtttgacacttcctttgcaaatg |
521 |
Q |
| |
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||||||||||||||| ||||||||| |||| ||| ||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
28398300 |
aaatgttatcatgcttatttgatag---ttcaacttttgtggatgcaagctcataaaagctgctcgacacttcctttgcaaatg |
28398220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 28403259 - 28403028
Alignment:
| Q |
15 |
cagagactagcctacca---ttctttagcaacctatctcccaattttttcacccagtttgcatcagggatgagcaaaaggtaaatgtctttgagattata |
111 |
Q |
| |
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|||| |||||||||||| |||||||| || || |||||||||||| |||||||||| ||||||||||||||||||||||||||||| || |||||||| |
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| T |
28403259 |
cagaaactagcctaccactcttctttagaaatctctctcccaattttatcacccagttagcatcagggatgagcaaaaggtaaatgtcattaagattata |
28403160 |
T |
|
| Q |
112 |
aatctgcttctgaacacccaaataattgaatgcaaactttacataactgcaatgctgatgaggctcttgaggtttgaaatttgaaagggattctagcata |
211 |
Q |
| |
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||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| | ||| || ||| |
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| T |
28403159 |
aatctgcttctaaacacccaaataattcaatgcaaactttacataactgctatgctgatgaagctcttgagttttgaaatttgaaaagagttccagaata |
28403060 |
T |
|
| Q |
212 |
tgaacaatgttatccttccaacatgtccaaca |
243 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
28403059 |
tgaacaatgttatccttccaacatgtccaaca |
28403028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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