View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_193 (Length: 206)
Name: NF1511_high_193
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_193 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 28 - 196
Target Start/End: Original strand, 3370950 - 3371118
Alignment:
| Q |
28 |
cgggcagcattcaatcttaacctaacaaccacaaatgtgctatacacaatgttctagtagcatgcaattcaaatctgcatatgcaccatgtgcatacagt |
127 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3370950 |
cgggcagcattcaatcttaacctaacaaccccaaatgtgctatacacaatgttctagtagcatgcaattcaaatctgcatatgcaccatgtgtatacagt |
3371049 |
T |
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| Q |
128 |
atacctattatatgacatttttcctttccatagagcattgacttctctttcttctatccacattctgtg |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3371050 |
atacctattatatgacatttttcctttccatagagcattgacttctctttcttctatccacattctgtg |
3371118 |
T |
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Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 3345281 - 3345351
Alignment:
| Q |
126 |
gtatacctattatatgacatttttcctttccatagagcattgacttctctttcttctatccacattctgtg |
196 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3345281 |
gtatacctattatatgacatctttcctttccatagagcattgacttctctttcttctatccacattctgtg |
3345351 |
T |
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