View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_high_194 (Length: 202)

Name: NF1511_high_194

Description: NF1511

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1511_high_194

[»] chr4 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr4 (Bit Score: 114; Significance: 5e-58; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 114; E-Value: 5e-58

Query Start/End: Original strand, 61 - 186

Target Start/End: Original strand, 25394068 - 25394193

Alignment:

Q	61	ttggttaactatttgatcatttcatttcaactttggtgtctccattttttgttgttttgatgttatattctgtaaagtattctgggtggtggaacgttgt	160	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	25394068	ttggttaactatttgatcatttcatttcaactttggtgtctccattttttgttgttttgatgttacattctgtaaagtattttgggtggtggaacgttgt	25394167	T

Q	161	aaaatgttcttaatgtctctggcttc	186	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	25394168	aaaatgttcttaatgtctttggcttc	25394193	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 30; E-Value: 0.00000007

Query Start/End: Original strand, 1 - 66

Target Start/End: Original strand, 14244654 - 14244719

Alignment:

Q	1	cttcaaagacatggaggcaactgagcgtcgtttcatacaatatccgctggttcatcaggattggtt	66	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\| \|\|\|\|\|\| \|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	14244654	cttccaagacatggagtcaactgatcttcttttcatgcaatgtcctctggttcatcaggcttggtt	14244719	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]