View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_20 (Length: 535)
Name: NF1511_high_20
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 255 - 519
Target Start/End: Original strand, 50670731 - 50671000
Alignment:
| Q |
255 |
gaggaatatattgaattgaggtaggtttggtatataaatgaatggaaaatgagatatttttggaggtgctaaagctaactttgctattaaactggatcga |
354 |
Q |
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| T |
50670731 |
gaggaatatattgaattgaggtaggtttggtatataaatgaatggaaaatgagatatttttggaggtgctaaagctaactttgctattaaactggatcaa |
50670830 |
T |
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| Q |
355 |
tcatctccaatatgaaatgtaatgcaatattcaacggttggtgtggggttgatcagaagacaacattgaattgaagttgaagcaaaga------agtatg |
448 |
Q |
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| T |
50670831 |
tcatctccaatatgaaatgtaatgcaatattcaacggttggtgtggggttgatcagaagacaacattgaattgaagttgaagcaaagaagtagtagtatg |
50670930 |
T |
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| Q |
449 |
ttggtggttttattccaacttagtgggggccttagtaaatttagattccatgccgttaggggatccctatg |
519 |
Q |
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| T |
50670931 |
ttggtgg-tttattccaacttagtgggggccttggtaaatttagattccatgccgttaggggatccctatg |
50671000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 10 - 222
Target Start/End: Original strand, 50670486 - 50670698
Alignment:
| Q |
10 |
aagaaaatagctgatgacattgaactgtgtttagaagctgaagcaaagcatggatcataaataattatataaagagcaatttttaattgctccctcaatt |
109 |
Q |
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| T |
50670486 |
aagagaatagctgatgacattgaactgtgtttagaatctgaagcaaagtatggatcataaataattatataaagagcaatttttaattgctccctcaatt |
50670585 |
T |
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| Q |
110 |
ttgccacataaaattgataattttggccaggtgatagacacaaaagaaaagggattgatcattgaaaacaaatgatcattatcattgatatttgatcttg |
209 |
Q |
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| T |
50670586 |
ttgccacataaaattgataattttggccaggtgatagacacaaaagaaaagggattgatcattgaaaacaaatgatcattatcattgatatttgatcttg |
50670685 |
T |
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| Q |
210 |
gctgagtaacaga |
222 |
Q |
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| T |
50670686 |
gctgagtaacaga |
50670698 |
T |
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