View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1511_high_27 (Length: 478)
Name: NF1511_high_27
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 20 - 465
Target Start/End: Original strand, 48593297 - 48593738
Alignment:
| Q |
20 |
aagggacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgttg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48593297 |
aagggacccaaagatatgggaaaacccattagagtttaggccagaaaggtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgttg |
48593396 |
T |
|
| Q |
120 |
ccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaaga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48593397 |
ccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaaga |
48593496 |
T |
|
| Q |
220 |
tgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtat |
319 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48593497 |
tgcttgattcggaatgtaagatcttagatcaaggcaaaaaaattgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtat |
48593596 |
T |
|
| Q |
320 |
tccagttgcaagattgaacccccttacatttcttcaactttaataaaagggaatttgtgataaattaagtagtgcaattgttgtttatgtctttctctat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48593597 |
tccagttgcaagattgaacccccttacatttcttcaactttagtaaaagggaatttgtgata----aagtagtgcaattgttgtttatgtctttctctat |
48593692 |
T |
|
| Q |
420 |
tcacaatcttaagcccttgctctcctatttctctttacttcttctc |
465 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48593693 |
tcacaatcttaagcccttgctcttctatttctctttacttcttctc |
48593738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 20 - 465
Target Start/End: Original strand, 48597908 - 48598349
Alignment:
| Q |
20 |
aagggacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgttg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48597908 |
aagggacccaaagatatgggaaaacccattagagtttaggccagaaaggtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgttg |
48598007 |
T |
|
| Q |
120 |
ccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaaga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48598008 |
ccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaaga |
48598107 |
T |
|
| Q |
220 |
tgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtat |
319 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48598108 |
tgcttgattcggaatgtaagatcttagatcaaggcaaaaaaattgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtat |
48598207 |
T |
|
| Q |
320 |
tccagttgcaagattgaacccccttacatttcttcaactttaataaaagggaatttgtgataaattaagtagtgcaattgttgtttatgtctttctctat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48598208 |
tccagttgcaagattgaacccccttacatttcttcaactttagtaaaagggaatttgtgata----aagtagtgcaattgttgtttatgtctttctctat |
48598303 |
T |
|
| Q |
420 |
tcacaatcttaagcccttgctctcctatttctctttacttcttctc |
465 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48598304 |
tcacaatcttaagcccttgctcttctatttctctttacttcttctc |
48598349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 8e-62; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 108 - 337
Target Start/End: Complemental strand, 23223119 - 23222890
Alignment:
| Q |
108 |
tttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || || |||||||||||| | || |||| || ||||| ||||| ||||| |||||||||| |
|
|
| T |
23223119 |
tttgagttgttgccatttggttctggaaggagaggttgcccggggatgcctttggccatgcgcgaattgccgactgtgattggagctttagtacaatgct |
23223020 |
T |
|
| Q |
208 |
ttgagtggaagatgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaatga |
307 |
Q |
| |
|
||||||||||||||||||| || ||| |||| | |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23223019 |
ttgagtggaagatgcttgactctgaaggtaaattattagatcaaggcaaaacaatcgatatggatgaacggcctggattgactgctcctagagccaatga |
23222920 |
T |
|
| Q |
308 |
tcttatttgtattccagttgcaagattgaa |
337 |
Q |
| |
|
|||| |||| |||||||||||||||||||| |
|
|
| T |
23222919 |
tcttttttgcattccagttgcaagattgaa |
23222890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 24 - 379
Target Start/End: Complemental strand, 23230957 - 23230593
Alignment:
| Q |
24 |
gacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaaaacaaaga---------tattgacatgaaagggcaccagtttgagt |
114 |
Q |
| |
|
|||| ||||||||||||||| ||||||| |||| |||||||||||||||||||||||||| ||| || ||||||||||| || | ||||| |
|
|
| T |
23230957 |
gaccaaaagatatgggaaaatgcattagattttaagccagaaaggtttttagaaaacaaagaaggaaacaatatagatatgaaagggcatcactatgagt |
23230858 |
T |
|
| Q |
115 |
tgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtg |
214 |
Q |
| |
|
|| | ||||||||||||||||||||||| || ||||||||||| |||||| | || ||||| ||||| ||| | || |||||||| |||||||||||||| |
|
|
| T |
23230857 |
tgctaccatttggttctggaaggagaggctgccctggtatgccgttggccatgcgccaattgcccaccgtagtcggggctttggtgcaatgctttgagtg |
23230758 |
T |
|
| Q |
215 |
gaagatgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatt |
314 |
Q |
| |
|
||| |||||||| || ||| |||| || ||||||| |||| | |||||||||||| | ||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
23230757 |
gaaaatgcttgactccgaaggtaaaatattagatcgaggcaaaacaatcgatatggatgaaagacctggattgaccgctcctagagccaatgatcttatt |
23230658 |
T |
|
| Q |
315 |
tgtattccagttgcaagattgaacccccttacatttcttcaactttaataaaagggaatttgtga |
379 |
Q |
| |
|
|||||||| || ||||| ||||||| ||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
23230657 |
tgtattccgatttcaagaatgaacccaaatacttttcttcagcttttgtaaaagggaatttgtga |
23230593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 23223216 - 23223159
Alignment:
| Q |
20 |
aagggacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaa |
77 |
Q |
| |
|
||||||| |||||| ||| |||||||| |||||||||| || ||||||||||||||| |
|
|
| T |
23223216 |
aagggactcaaagacttggaaaaacccactagagtttaggcctgaaaggtttttagaa |
23223159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University