View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_28 (Length: 477)
Name: NF1511_high_28
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 20 - 461
Target Start/End: Complemental strand, 4304991 - 4304551
Alignment:
| Q |
20 |
ataaaagtaactaacaaaacatacactaacctaagttaaaagccaatttgtaatttggataaattctcaataatcacttgtaaaaacatacgaataaaat |
119 |
Q |
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| T |
4304991 |
ataaaagtaactaacaaaacatacactaacctaagttaaaagccaatttgtaatttggataaattctcaataatcacttgtaaaaacatacgaataaaat |
4304892 |
T |
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| Q |
120 |
ctaaacaataactgtgcaaaacaataagttgaagttagtttctgcatttccattttttataactttcgtaaatttctccataaataactatacttcagaa |
219 |
Q |
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| T |
4304891 |
ctaaacaataactgtgcaaaacaataagttgaagttagtttctgcatttccattttttataactttcgtaaatttctccataaataactatacttcagaa |
4304792 |
T |
|
| Q |
220 |
gcttatagaggcnnnnnnnnaagggaagaaacataaatttaatgtaattgagaagctttaacaagctagaagctgatccaaagtaagcttaagaagagaa |
319 |
Q |
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| T |
4304791 |
gcttatagaggcttttttttaagggaagaaacataaatttaatgtaattgagaagctttaacaagctagaagctgatcc-aagtaagcttaagaagagaa |
4304693 |
T |
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| Q |
320 |
aaacatgcaaccaaaaacaattcaattataaaaataaatttggaatctaagatgaatttctttctccataggcttagtaatgaatctagatgcatcaata |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4304692 |
aaacatgcaaccaaaaacaattcaattataaaaataaatttggaatctaagatgaatttctttctccataggcttagtaatgaatctagatgcatcaata |
4304593 |
T |
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| Q |
420 |
gtgaattactgattaaaaaacatcaattcacttatagaaaaa |
461 |
Q |
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| T |
4304592 |
gtgaattactgattaaaaaacatcaattcacttataaaaaaa |
4304551 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 28281664 - 28281608
Alignment:
| Q |
244 |
gaagaaacataaatttaatgtaattgagaagctttaacaagctagaagctgatccaa |
300 |
Q |
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|||||| |||||||||| | ||||||||||||||| | |||||| ||| |||||||| |
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| T |
28281664 |
gaagaaccataaatttattttaattgagaagcttttataagctaaaagttgatccaa |
28281608 |
T |
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