View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_42 (Length: 432)
Name: NF1511_high_42
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 403
Target Start/End: Original strand, 52779206 - 52779600
Alignment:
| Q |
8 |
atatgaacacatatcacatatgtattagaatggcaaaaaacgacaaattttcaaaataaaattacaattactaaatggaattatgcgctcacagtttgca |
107 |
Q |
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| T |
52779206 |
atatgaacacatatcacatatgtattagaatggcaaaaaacgacaaattttcaaaataaaattacaattactaaatggaattatacgctcacagttcgca |
52779305 |
T |
|
| Q |
108 |
aagacaaccagaatggaccatttttcccacnnnnnnnnnnattcaaatggaccacttttgtcttatagtcataacaaaacgttttctccatttattttca |
207 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52779306 |
aagacaaccagaatggaccatttttcccacttttttttt-attcaaatggaccacttttgtcttatagtcataacaaaacgttttctccatttattttca |
52779404 |
T |
|
| Q |
208 |
aacttttaacaannnnnnnngattttaatacaaccacttgtgtccaccctcacgcttgcagtcttaccttccccctactataaaatccttgcatgtgtac |
307 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52779405 |
aacttttaacaaatttttttgattttaatacaaccacttgtgtccaccctcacgcttgcagtcttaccttccccctactataaaatccttgcatgtgtac |
52779504 |
T |
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| Q |
308 |
taagcaatatgcgcacaccacaatccacaaatataaattcccttaatactactcttgttgtatgagtttgacaatatgaaaatcaacatggaatgt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52779505 |
taagcaatatgcgcacaccacaatccacaaatataaattcccttaatactactcttgttgtatgagtttgacaatatgaaaatcaacatggaatgt |
52779600 |
T |
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