View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1511_high_52 (Length: 399)
Name: NF1511_high_52
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_52 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 10 - 383
Target Start/End: Original strand, 33076818 - 33077180
Alignment:
| Q |
10 |
gcacagacagaaaaatgaaagtaaacctatttgtaaactaaataataaaaagcaaatgtctttaaagaagaggcatgcatatctccaaatgtcatattcg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33076818 |
gcacagacagaaaaatgaaagtaaacctatttgtaaactaaataataaaaagcaaatgtcttcaaagaagaggcatgcatatctccaaatgtcatattcg |
33076917 |
T |
|
| Q |
110 |
atttgctattctacacgtagtacttcatagctttactattcaaaagggtccaattgtttgatcctttagcattggaagaatcttagctgcacgttggtca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33076918 |
atttgctattctacacgtagtacttcatagctttactattcaaaagggtccaattgtttgatcctttagcattggaagaatcttagctgcacgttggtca |
33077017 |
T |
|
| Q |
210 |
gacaagtcagagttcatttgtccccgaacaagatcctaaaacaagagaaaccggatatgtttttggttgacttatttgaacttatcttctactaacataa |
309 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33077018 |
gacaagtcagagttcatttgtccctgaacaagatcctaaaacaagagaaattggatatgtttttggttgacttatttgaacttatctcctactaacataa |
33077117 |
T |
|
| Q |
310 |
attttgcgagattgtttgaattaatgcttataagaaaaatgatttaacttaattttatctttttataaagaaat |
383 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33077118 |
attttgcgagattgtttgaatta-----------aaaaatgatttaacttaattttatctttttataaagaaat |
33077180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University