View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_57 (Length: 395)
Name: NF1511_high_57
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_57 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 48399215 - 48398834
Alignment:
| Q |
1 |
atagtgtcaaacacctcattatggtgccattaatattatgggtcattgggtcccacgtctttttggctagtgccacggtctttctcattcgatgtatgct |
100 |
Q |
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| T |
48399215 |
atagtgtcaaacacctcattatggtgccattaatattatgggtcattgggtcccacgtctttttggctagtgccacggtctttctcattcgatgtatgct |
48399116 |
T |
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| Q |
101 |
atgccatgtacg--------agtagtttagagtttttaaaatatttcaaaggaaaatgttaatatactaaaatcaaaattaataacatatgtcgaaagac |
192 |
Q |
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| T |
48399115 |
atgccatgtatgtacgagtgagtagtgtagagtttttaaaatatttcaaaggaaaatgttaatatactaaaatcaaaattaataacatatgtcgaaagac |
48399016 |
T |
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| Q |
193 |
atgtgttagcgttacattatttcaaatacacatactaattaataagaaaattatataacaagatgttgttattgtagctaatataagctactacaacttt |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48399015 |
atgtgttagcgttacattatttcaaatacacatactaattaataagaaaattatataacaagatgttgctattgtagctaatataagctactacaacttt |
48398916 |
T |
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| Q |
293 |
ttaatataatttaatttaatttattacagtggatttgttggtccacttgagagctaaattggagatatggtttgtggaagttccatt |
379 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48398915 |
ttaatttaatttaa-----tttattacagtggatttgttggtccacttgagagctaaattggagatatggtttgtggaagttccatt |
48398834 |
T |
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