View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_59 (Length: 391)
Name: NF1511_high_59
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_59 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 376
Target Start/End: Original strand, 50640638 - 50641000
Alignment:
| Q |
13 |
aatattgaaacaataagaaacaaagagactaaaaatgaatactatggagatagctgataattgaacacccttaggtggcaaatacaaagttcataggagc |
112 |
Q |
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| T |
50640638 |
aatattgaaacaataagaaacaaagagactaaaaatgaatactatggagatagctgataattgaacacccttaggtggcaaatacaaagttcatag-agc |
50640736 |
T |
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| Q |
113 |
aatttgattagacaaatatcatattgtacaatatgatataatattannnnnnnngaaaggaatatgatataatattactaaattgcatgatgacgatgat |
212 |
Q |
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| T |
50640737 |
aatttgattagacaaatatcatattgtacaatatgatataatattattttttttgaaaggaatatgatataatattactaaagtgcatgatgacgatgat |
50640836 |
T |
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| Q |
213 |
gatattatttaagtaaattaatagctatagagtctagagcaattgtttaacaatagctgctgttatgactgctacatcatgcatatcaatgttctcatca |
312 |
Q |
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| T |
50640837 |
gctattatttaagtaaattactagctatagagtctagagcaattgtttaacaatagctgctgttatgactgctacatcatgcatatcaatattctcatca |
50640936 |
T |
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| Q |
313 |
gagattggtgacttccctttgaagccattctcacaagtagtggcgtcatttgcagcatcatttg |
376 |
Q |
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| T |
50640937 |
gagattggtgacttccctttgaagccattctcacaagtagtggcgtcatttgcagcatcatttg |
50641000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 183 - 376
Target Start/End: Original strand, 50635715 - 50635908
Alignment:
| Q |
183 |
aatattactaaattgcatgatgacgatgatgatattatttaagtaaattaatagctatagagtctagagcaattgtttaacaatagctgctgttatgact |
282 |
Q |
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| T |
50635715 |
aatattattaaattgcatgatgacgatgatgatataatttgagtaaattagtagctatagaatctagagcaattgtttaacaatagctgctgttatgact |
50635814 |
T |
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| Q |
283 |
gctacatcatgcatatcaatgttctcatcagagattggtgacttccctttgaagccattctcacaagtagtggcgtcatttgcagcatcatttg |
376 |
Q |
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| T |
50635815 |
gctacatcatgcatatcaatattctcatcagagattggtgatttccctttgaatccattctcacaagtggtggcttcaattgcaacatcatttg |
50635908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 50635651 - 50635706
Alignment:
| Q |
90 |
gcaaatacaaagttcataggagcaatttgattagacaaatatcatattgtacaata |
145 |
Q |
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| T |
50635651 |
gcaaatgcgaagttcatagcagcaatttgattagacaaatatcatattgtataata |
50635706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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