View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_high_61 (Length: 379)

Name: NF1511_high_61
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_high_61
NF1511_high_61
[»] chr8 (5 HSPs)
chr8 (1-371)||(34743520-34743887)
chr8 (196-283)||(10773184-10773271)
chr8 (321-371)||(10773307-10773357)
chr8 (67-111)||(12503301-12503345)
chr8 (67-123)||(34743184-34743240)
[»] chr5 (4 HSPs)
chr5 (155-283)||(25760270-25760398)
chr5 (185-255)||(25803636-25803706)
chr5 (65-94)||(38299926-38299955)
chr5 (67-111)||(15238975-15239019)
[»] scaffold0005 (1 HSPs)
scaffold0005 (160-283)||(269287-269410)
[»] scaffold0085 (1 HSPs)
scaffold0085 (155-283)||(47014-47142)
[»] chr2 (3 HSPs)
chr2 (156-261)||(19984284-19984389)
chr2 (154-263)||(12965270-12965378)
chr2 (64-94)||(37828443-37828473)
[»] chr1 (1 HSPs)
chr1 (65-98)||(42175309-42175342)
[»] chr3 (4 HSPs)
chr3 (66-98)||(25858059-25858091)
chr3 (67-111)||(1885127-1885171)
chr3 (67-111)||(30528337-30528381)
chr3 (58-94)||(38421390-38421426)
[»] scaffold0097 (1 HSPs)
scaffold0097 (67-108)||(48082-48123)
[»] chr4 (1 HSPs)
chr4 (67-96)||(52073270-52073299)
[»] chr7 (4 HSPs)
chr7 (66-94)||(1505542-1505570)
chr7 (65-93)||(23475762-23475790)
chr7 (65-93)||(23534175-23534203)
chr7 (62-98)||(33859474-33859510)
[»] chr6 (3 HSPs)
chr6 (62-98)||(25562580-25562616)
chr6 (62-98)||(26002031-26002067)
chr6 (62-94)||(26102096-26102128)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 34743887 - 34743520
Alignment:
Q  1 tcaaatatatgcaacaaatggttgtaggttcgggttataactataagttggatgcaatttgttgtggaaaattgctcttctcccaacaaaaaacactcca 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||     
T  34743887 tcaaatatatgcaacaaatggttgtaggttcgggctataactataagttggatgcaatttgttgtggaaaattgctcttctcccagcaaaaaatgctccc 34743788  T
Q  101 ttccaactgaacagtccaaaatatcccgtgtcagttaagactcatcttctacgattatttctttttccttgttcctttgaagtctgatattgaaagcaaa 200  Q
    || ||||||||| | |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34743787 tttcaactgaactgcccaaaataccccgtgtaagttaagactcatcttctacgattatttctttttccttgttcctttgaagtctgatattgaaagcaaa 34743688  T
Q  201 cttgaataaacaacgcactgatttatggcgtttcctccataggaaccttcgattcaaatttcagaaagtaatatgaaattattnnnnnnnnnnnnnnnnn 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||                     
T  34743687 cttgaataaacaacgcactgatttatggcgtttcctccataggaaccttcgattcaaatttcaaaaagtaatatgaaattattaaaaaaaatataaggaa 34743588  T
Q  301 nnnnntgttgttgtaattacgatgctcagggaatacgaaccaaaacaaagggatcatgtcgcagaataatc 371  Q
         |||||   |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34743587 aaaaatgttg---taattacgatgctcagggaatacgaaccaaaacaaagggatcatgttgcagaataatc 34743520  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 196 - 283
Target Start/End: Original strand, 10773184 - 10773271
Alignment:
Q  196 gcaaacttgaataaacaacgcactgatttatggcgtttcctccataggaaccttcgattcaaatttcagaaagtaatatgaaattatt 283  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||| |||||| ||||||||||||    
T  10773184 gcaaacttgaataaacaacgcattgatttatggcgtctcctccataggaaccttcgattcatatttcaaaaagtactatgaaattatt 10773271  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 10773307 - 10773357
Alignment:
Q  321 gatgctcagggaatacgaaccaaaacaaagggatcatgtcgcagaataatc 371  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10773307 gatgctcagggaatacgaaccaaaacaaagggatcatgttgcagaataatc 10773357  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 12503301 - 12503345
Alignment:
Q  67 gaaaattgctcttctcccaacaaaaaacactccattccaactgaa 111  Q
    ||||||||||||||||||||||||||||||||| | |||||||||    
T  12503301 gaaaattgctcttctcccaacaaaaaacactccctcccaactgaa 12503345  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 34743184 - 34743240
Alignment:
Q  67 gaaaattgctcttctcccaacaaaaaacactccattccaactgaacagtccaaaata 123  Q
    ||||| |||||||||||||||||||||  |||| | |||||||||| ||||||||||    
T  34743184 gaaaaatgctcttctcccaacaaaaaatgctccctcccaactgaactgtccaaaata 34743240  T

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Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 155 - 283
Target Start/End: Complemental strand, 25760398 - 25760270
Alignment:
Q  155 ttatttctttttccttgttcctttgaagtctgatattgaaagcaaacttgaataaacaacgcactgatttatggcgtttcctccataggaaccttcgatt 254  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||  ||||||||| ||||||||||||| |||||||||||    
T  25760398 ttatttctttttccttgttcctttgaagcctggtattgaaagcaaacttgaataaacaaggcatcgatttatggtgtttcctccatagaaaccttcgatt 25760299  T
Q  255 caaatttcagaaagtaatatgaaattatt 283  Q
    ||||||||| |||| ||||||||||||||    
T  25760298 caaatttcaaaaagaaatatgaaattatt 25760270  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 185 - 255
Target Start/End: Original strand, 25803636 - 25803706
Alignment:
Q  185 tgatattgaaagcaaacttgaataaacaacgcactgatttatggcgtttcctccataggaaccttcgattc 255  Q
    ||||||||||||||||||||| ||||||| |||  ||||||||| ||||||||||||| ||||||||||||    
T  25803636 tgatattgaaagcaaacttgattaaacaaggcatcgatttatggtgtttcctccatagaaaccttcgattc 25803706  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 94
Target Start/End: Complemental strand, 38299955 - 38299926
Alignment:
Q  65 tggaaaattgctcttctcccaacaaaaaac 94  Q
    ||||||||||||||||||||||||||||||    
T  38299955 tggaaaattgctcttctcccaacaaaaaac 38299926  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 15239019 - 15238975
Alignment:
Q  67 gaaaattgctcttctcccaacaaaaaacactccattccaactgaa 111  Q
    |||||||||||||||||||||||||||| |||  | |||||||||    
T  15239019 gaaaattgctcttctcccaacaaaaaacgctcactcccaactgaa 15238975  T

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Target: scaffold0005 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 269287 - 269410
Alignment:
Q  160 tctttttccttgttcctttgaagtctgatattgaaagcaaacttgaataaacaacgcactgatttatggcgtttcctccataggaaccttcgattcaaat 259  Q
    |||||||||||||||||||||||  |||||||| ||||||||||||||||| || |||| ||||||||| ||||||||||||||||||||||||||||||    
T  269287 tctttttccttgttcctttgaagcttgatattggaagcaaacttgaataaaaaaggcaccgatttatggtgtttcctccataggaaccttcgattcaaat 269386  T
Q  260 ttcagaaagtaatatgaaattatt 283  Q
    |||| |||| ||||||||||||||    
T  269387 ttcaaaaagaaatatgaaattatt 269410  T

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Target: scaffold0085 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 155 - 283
Target Start/End: Complemental strand, 47142 - 47014
Alignment:
Q  155 ttatttctttttccttgttcctttgaagtctgatattgaaagcaaacttgaataaacaacgcactgatttatggcgtttcctccataggaaccttcgatt 254  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| | |  ||||||||| |||| |||||| | |||||||||||    
T  47142 ttatttctttttccttgttcctttgaagcctggtattgaaagcaaacttgaataaacaaggtatcgatttatggtgttttctccatcgaaaccttcgatt 47043  T
Q  255 caaatttcagaaagtaatatgaaattatt 283  Q
    ||||||||| |||| ||||||||||||||    
T  47042 caaatttcaaaaagaaatatgaaattatt 47014  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 156 - 261
Target Start/End: Original strand, 19984284 - 19984389
Alignment:
Q  156 tatttctttttccttgttcctttgaagtctgatattgaaagcaaacttgaataaacaacgcactgatttatggcgtttcctccataggaaccttcgattc 255  Q
    ||||||||||||||||||||||||||| ||  |||| ||||||||||||||||||||| |||  ||||||||| ||||||||||||| ||||||||||||    
T  19984284 tatttctttttccttgttcctttgaagcctagtattaaaagcaaacttgaataaacaaggcatcgatttatggtgtttcctccatagaaaccttcgattc 19984383  T
Q  256 aaattt 261  Q
    ||||||    
T  19984384 aaattt 19984389  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 12965270 - 12965378
Alignment:
Q  154 attatttctttttccttgttcctttgaagtctgatattgaaagcaaacttgaataaacaacgcactgatttatggcgtttcctccataggaaccttcgat 253  Q
    ||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| |||  ||| ||||| ||||||| | || |||||||||||    
T  12965270 attatttctttttccttattcctttgaagcctgatattgaaatcaaacttgaataaacaaggcatcgatctatggtgtttccttccta-gaaccttcgat 12965368  T
Q  254 tcaaatttca 263  Q
    ||||||||||    
T  12965369 tcaaatttca 12965378  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 94
Target Start/End: Original strand, 37828443 - 37828473
Alignment:
Q  64 gtggaaaattgctcttctcccaacaaaaaac 94  Q
    |||||||||||||||||||||||||||||||    
T  37828443 gtggaaaattgctcttctcccaacaaaaaac 37828473  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 42175342 - 42175309
Alignment:
Q  65 tggaaaattgctcttctcccaacaaaaaacactc 98  Q
    ||||||||||||||||||||||||||||||||||    
T  42175342 tggaaaattgctcttctcccaacaaaaaacactc 42175309  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 25858091 - 25858059
Alignment:
Q  66 ggaaaattgctcttctcccaacaaaaaacactc 98  Q
    |||||||||||||||||||||||||||||||||    
T  25858091 ggaaaattgctcttctcccaacaaaaaacactc 25858059  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 1885127 - 1885171
Alignment:
Q  67 gaaaattgctcttctcccaacaaaaaacactccattccaactgaa 111  Q
    ||||| ||||||||||||| ||||||||||||| | |||||||||    
T  1885127 gaaaaatgctcttctcccatcaaaaaacactccctcccaactgaa 1885171  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 30528337 - 30528381
Alignment:
Q  67 gaaaattgctcttctcccaacaaaaaacactccattccaactgaa 111  Q
    |||||||||| |||||||||||||||||||||  | |||||||||    
T  30528337 gaaaattgcttttctcccaacaaaaaacactcactaccaactgaa 30528381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 38421426 - 38421390
Alignment:
Q  58 tttgttgtggaaaattgctcttctcccaacaaaaaac 94  Q
    |||||| | ||||||||||||||||||||||||||||    
T  38421426 tttgttttagaaaattgctcttctcccaacaaaaaac 38421390  T

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Target: scaffold0097 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 48123 - 48082
Alignment:
Q  67 gaaaattgctcttctcccaacaaaaaacactccattccaact 108  Q
    |||||||||| |||||||||||||||||||| ||| ||||||    
T  48123 gaaaattgctattctcccaacaaaaaacacttcatcccaact 48082  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 96
Target Start/End: Original strand, 52073270 - 52073299
Alignment:
Q  67 gaaaattgctcttctcccaacaaaaaacac 96  Q
    ||||||||||||||||||||||||||||||    
T  52073270 gaaaattgctcttctcccaacaaaaaacac 52073299  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 94
Target Start/End: Original strand, 1505542 - 1505570
Alignment:
Q  66 ggaaaattgctcttctcccaacaaaaaac 94  Q
    |||||||||||||||||||||||||||||    
T  1505542 ggaaaattgctcttctcccaacaaaaaac 1505570  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 23475790 - 23475762
Alignment:
Q  65 tggaaaattgctcttctcccaacaaaaaa 93  Q
    |||||||||||||||||||||||||||||    
T  23475790 tggaaaattgctcttctcccaacaaaaaa 23475762  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 23534203 - 23534175
Alignment:
Q  65 tggaaaattgctcttctcccaacaaaaaa 93  Q
    |||||||||||||||||||||||||||||    
T  23534203 tggaaaattgctcttctcccaacaaaaaa 23534175  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 33859510 - 33859474
Alignment:
Q  62 ttgtggaaaattgctcttctcccaacaaaaaacactc 98  Q
    |||| |||||||||||||||||||||||||| |||||    
T  33859510 ttgttgaaaattgctcttctcccaacaaaaaccactc 33859474  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 25562616 - 25562580
Alignment:
Q  62 ttgtggaaaattgctcttctcccaacaaaaaacactc 98  Q
    |||| |||||||||||||||||||||||||| |||||    
T  25562616 ttgttgaaaattgctcttctcccaacaaaaaccactc 25562580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 26002067 - 26002031
Alignment:
Q  62 ttgtggaaaattgctcttctcccaacaaaaaacactc 98  Q
    |||| |||||||||||||||||||||||||| |||||    
T  26002067 ttgttgaaaattgctcttctcccaacaaaaaccactc 26002031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 94
Target Start/End: Complemental strand, 26102128 - 26102096
Alignment:
Q  62 ttgtggaaaattgctcttctcccaacaaaaaac 94  Q
    |||| ||||||||||||||||||||||||||||    
T  26102128 ttgttgaaaattgctcttctcccaacaaaaaac 26102096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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