View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_high_65 (Length: 368)

Name: NF1511_high_65
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_high_65
NF1511_high_65
[»] chr2 (36 HSPs)
chr2 (4-353)||(1930611-1930963)
chr2 (197-291)||(18719734-18719829)
chr2 (164-285)||(33069174-33069297)
chr2 (205-295)||(42094252-42094342)
chr2 (164-294)||(42029342-42029474)
chr2 (212-294)||(44247538-44247621)
chr2 (210-294)||(16209375-16209460)
chr2 (164-294)||(42251163-42251295)
chr2 (162-291)||(37810151-37810282)
chr2 (179-280)||(4237273-4237375)
chr2 (248-294)||(25666798-25666844)
chr2 (254-295)||(45300366-45300407)
chr2 (250-294)||(23001430-23001474)
chr2 (248-295)||(1469738-1469785)
chr2 (181-295)||(3466412-3466527)
chr2 (248-295)||(42029435-42029482)
chr2 (248-291)||(45300460-45300503)
chr2 (248-294)||(42251256-42251302)
chr2 (166-246)||(12779511-12779591)
chr2 (248-292)||(33171692-33171736)
chr2 (247-295)||(41496058-41496106)
chr2 (248-295)||(9430230-9430277)
chr2 (248-295)||(12703471-12703518)
chr2 (248-295)||(12779501-12779547)
chr2 (248-295)||(12779743-12779790)
chr2 (248-295)||(15194534-15194581)
chr2 (251-294)||(30841009-30841052)
chr2 (234-292)||(44487230-44487289)
chr2 (225-294)||(2683445-2683515)
chr2 (213-242)||(29160898-29160927)
chr2 (248-285)||(37810155-37810192)
chr2 (248-281)||(44247631-44247664)
chr2 (242-290)||(8090931-8090979)
chr2 (251-295)||(17487277-17487321)
chr2 (248-292)||(33069169-33069213)
chr2 (247-291)||(35715065-35715109)
[»] chr5 (25 HSPs)
chr5 (135-294)||(3907630-3907793)
chr5 (140-277)||(22399749-22399892)
chr5 (166-294)||(25545229-25545355)
chr5 (214-295)||(38029542-38029621)
chr5 (248-295)||(25545219-25545264)
chr5 (248-295)||(28907367-28907414)
chr5 (248-295)||(28943762-28943809)
chr5 (248-295)||(41169483-41169530)
chr5 (216-294)||(43461961-43462040)
chr5 (209-294)||(4158132-4158218)
chr5 (248-285)||(22399779-22399816)
chr5 (251-284)||(33420656-33420689)
chr5 (165-295)||(42420016-42420148)
chr5 (205-279)||(7721338-7721413)
chr5 (248-295)||(17474866-17474913)
chr5 (248-295)||(42249409-42249456)
chr5 (248-281)||(825072-825105)
chr5 (248-281)||(4190072-4190105)
chr5 (210-290)||(13122043-13122124)
chr5 (210-286)||(33029548-33029625)
chr5 (210-290)||(36945609-36945690)
chr5 (248-297)||(40927699-40927748)
chr5 (248-285)||(42420110-42420147)
chr5 (248-295)||(3907655-3907700)
chr5 (248-284)||(27195262-27195298)
[»] chr6 (17 HSPs)
chr6 (181-297)||(12731579-12731696)
chr6 (225-291)||(1473618-1473685)
chr6 (181-267)||(11650916-11651004)
chr6 (244-295)||(9645006-9645057)
chr6 (244-295)||(9651023-9651074)
chr6 (212-295)||(4033043-4033132)
chr6 (210-291)||(6643369-6643451)
chr6 (251-289)||(24110068-24110106)
chr6 (250-291)||(4494397-4494438)
chr6 (249-295)||(17389991-17390037)
chr6 (248-289)||(479808-479849)
chr6 (210-294)||(3150209-3150294)
chr6 (248-297)||(24783959-24784008)
chr6 (212-264)||(31054684-31054737)
chr6 (247-291)||(6643318-6643362)
chr6 (251-295)||(12424892-12424935)
chr6 (251-295)||(31946914-31946958)
[»] chr4 (27 HSPs)
chr4 (166-295)||(21433882-21434013)
chr4 (164-295)||(45654020-45654151)
chr4 (203-291)||(31758690-31758779)
chr4 (191-295)||(2324757-2324862)
chr4 (136-294)||(3688570-3688735)
chr4 (248-295)||(21433872-21433919)
chr4 (248-294)||(52375010-52375056)
chr4 (164-295)||(15134566-15134699)
chr4 (203-294)||(16457920-16458012)
chr4 (248-307)||(34119626-34119686)
chr4 (212-295)||(52374916-52375000)
chr4 (248-295)||(33414002-33414049)
chr4 (181-287)||(38036244-38036349)
chr4 (248-295)||(7403176-7403223)
chr4 (248-287)||(32286324-32286363)
chr4 (253-295)||(17508764-17508806)
chr4 (210-291)||(24976234-24976316)
chr4 (248-294)||(41840685-41840731)
chr4 (205-269)||(17181268-17181333)
chr4 (247-295)||(16577252-16577300)
chr4 (248-294)||(993219-993263)
chr4 (248-291)||(19382300-19382343)
chr4 (248-295)||(41840592-41840639)
chr4 (249-295)||(2247579-2247625)
chr4 (248-295)||(1338432-1338477)
chr4 (253-285)||(19382390-19382422)
chr4 (248-314)||(24321121-24321186)
[»] chr7 (19 HSPs)
chr7 (210-294)||(7017140-7017225)
chr7 (210-294)||(7032498-7032583)
chr7 (217-295)||(5443591-5443669)
chr7 (135-295)||(12275714-12275878)
chr7 (179-291)||(26647714-26647826)
chr7 (207-295)||(49106957-49107045)
chr7 (205-295)||(40134435-40134524)
chr7 (217-295)||(5452636-5452714)
chr7 (181-281)||(3235584-3235685)
chr7 (203-295)||(47497747-47497840)
chr7 (248-295)||(2276276-2276323)
chr7 (203-294)||(11201293-11201385)
chr7 (210-280)||(7526172-7526243)
chr7 (248-295)||(10056622-10056669)
chr7 (248-295)||(26647690-26647737)
chr7 (210-295)||(316413-316499)
chr7 (210-291)||(18089756-18089838)
chr7 (248-295)||(3235558-3235605)
chr7 (248-306)||(26862902-26862959)
[»] chr8 (20 HSPs)
chr8 (164-296)||(40175900-40176035)
chr8 (166-295)||(34504386-34504517)
chr8 (125-294)||(4994155-4994328)
chr8 (179-283)||(42072671-42072776)
chr8 (164-289)||(27072821-27072947)
chr8 (200-294)||(26018504-26018601)
chr8 (248-287)||(34504384-34504423)
chr8 (248-295)||(40566549-40566596)
chr8 (181-295)||(40694638-40694753)
chr8 (126-295)||(2288598-2288773)
chr8 (248-295)||(27072908-27072955)
chr8 (208-284)||(38835010-38835087)
chr8 (248-295)||(20271106-20271153)
chr8 (248-295)||(21057734-21057781)
chr8 (248-295)||(36009915-36009962)
chr8 (247-287)||(38835092-38835134)
chr8 (248-295)||(40694612-40694659)
chr8 (251-285)||(43042234-43042268)
chr8 (248-281)||(40696201-40696234)
chr8 (247-295)||(35586495-35586543)
[»] chr3 (27 HSPs)
chr3 (166-292)||(32880999-32881127)
chr3 (179-294)||(11532458-11532574)
chr3 (181-295)||(31205368-31205483)
chr3 (134-279)||(35357290-35357441)
chr3 (166-281)||(14345160-14345277)
chr3 (165-295)||(36480715-36480847)
chr3 (213-273)||(37341245-37341305)
chr3 (248-295)||(3901586-3901633)
chr3 (166-295)||(51541254-51541385)
chr3 (248-294)||(44890430-44890476)
chr3 (255-294)||(19560729-19560768)
chr3 (248-294)||(3901499-3901545)
chr3 (210-271)||(19158682-19158744)
chr3 (212-285)||(29955047-29955121)
chr3 (212-285)||(30004201-30004275)
chr3 (253-294)||(32881095-32881136)
chr3 (213-295)||(1753315-1753398)
chr3 (248-295)||(14345150-14345197)
chr3 (248-287)||(35357324-35357363)
chr3 (248-295)||(36480706-36480753)
chr3 (248-294)||(799260-799306)
chr3 (248-294)||(40554131-40554177)
chr3 (248-289)||(37189237-37189278)
chr3 (248-289)||(51541250-51541291)
chr3 (251-295)||(1458633-1458677)
chr3 (251-291)||(40117822-40117862)
chr3 (250-294)||(46555587-46555631)
[»] chr1 (24 HSPs)
chr1 (166-288)||(2542711-2542835)
chr1 (136-294)||(40668931-40669091)
chr1 (248-295)||(31970119-31970166)
chr1 (166-295)||(38663650-38663781)
chr1 (166-295)||(49403471-49403602)
chr1 (248-297)||(49822621-49822670)
chr1 (164-295)||(45563065-45563198)
chr1 (164-294)||(34437598-34437729)
chr1 (248-295)||(2542701-2542748)
chr1 (166-295)||(31970129-31970260)
chr1 (212-291)||(40374093-40374172)
chr1 (181-291)||(939335-939448)
chr1 (205-295)||(7444280-7444371)
chr1 (212-287)||(45925164-45925240)
chr1 (248-295)||(16661814-16661861)
chr1 (248-295)||(34437690-34437737)
chr1 (166-294)||(731339-731468)
chr1 (248-294)||(38663744-38663790)
chr1 (249-291)||(40669023-40669065)
chr1 (248-289)||(31851952-31851993)
chr1 (253-291)||(15366504-15366542)
chr1 (211-275)||(4713269-4713334)
chr1 (247-295)||(21281476-21281525)
chr1 (213-280)||(23317923-23317991)
[»] scaffold0003 (1 HSPs)
scaffold0003 (212-295)||(136377-136461)
[»] scaffold0137 (1 HSPs)
scaffold0137 (248-295)||(8273-8320)
[»] scaffold0015 (1 HSPs)
scaffold0015 (248-295)||(200957-201004)


Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 4 - 353
Target Start/End: Complemental strand, 1930963 - 1930611
Alignment:
Q  4 acttgtctaaggttggggaccccaatgatgttaaaagtgtgatttgactaattgttatacaaggttttaagtcggcattccttnnnnnnnnng--tttta 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||         |  |||||    
T  1930963 acttgtctaaggttggggaccccaatgatgttaaaagtgtgatttgactaagtgttatacaaggttttaagtcggcattccttaaaaaaaaagagtttta 1930864  T
Q  102 agtcagcatatgaggttgagtcacaatataaaaagagaaatgctatcaacacacattccaatacttttcaacacacttttttgattggctaaaagttaca 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1930863 agtcagcatatgaggttgagtcacaatataaaaagagaaatgctagcaacacacattccaatacttttcaacacacttttttgattggctaaaagttaca 1930764  T
Q  202 cgagacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgttatatca 300  Q
    |||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1930763 cgagacctaccaaatttatatgggacccacataatttgatggaacatatgtgaattttaaccaatcaaaaagagtgtcttgaaaaatgtgtgttatatca 1930664  T
Q  301 tttctctaccaaaagttgcaattacaagtgaatacactctggagctattttct 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1930663 tttctctaccaaaagttgcaattacaagtgaatacactctggagctattttct 1930611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 197 - 291
Target Start/End: Complemental strand, 18719829 - 18719734
Alignment:
Q  197 ttacacgagacctaccaaatttatatgagacccacataatttggtg-aacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 291  Q
    ||||| |||||| | |||||||||||| ||||||||| |||||||| |||   |||||||||||||||||||||||||||||||||||||||||||    
T  18719829 ttacatgagacccatcaaatttatatgggacccacatgatttggtggaactcgtgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 18719734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 285
Target Start/End: Original strand, 33069174 - 33069297
Alignment:
Q  164 acttttcaacacacttt-tttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaac 261  Q
    ||||||||||||||||| |||||| || ||||| | |||  ||||| ||||| |||||||| |||||||||||||| || | ||  | |||| |||||||    
T  33069174 acttttcaacacactttctttgatcggttaaaattcacattagacccaccaagtttatatgggacccacataatttagtgggacccaagtgatttttaac 33069273  T
Q  262 caatcaaaaagagtgtgttgaaaa 285  Q
    ||||||||||||||||||||||||    
T  33069274 caatcaaaaagagtgtgttgaaaa 33069297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 205 - 295
Target Start/End: Original strand, 42094252 - 42094342
Alignment:
Q  205 gacctaccaaatttatatgagacccacataatttggtgaacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||| |||||||||||||| ||||||||| ||||||||     |||||||||||||||||||||| || |||||||||||| |||||||||    
T  42094252 gacccaccaaatttatatgggacccacatgatttggtgggaccatgtgaattttaaccaatcaaagagtgtgtgttgaaaagtgtgtgtta 42094342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 294
Target Start/End: Complemental strand, 42029474 - 42029342
Alignment:
Q  164 acttttcaacacacttttttg-attggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaac 261  Q
    ||||||||||||||||||||  ||||| ||||| | ||| |||||| |||||||||||||| |  || ||| ||||||| | ||  || |||||||||||    
T  42029474 acttttcaacacacttttttttattggttaaaattcacatgagacccaccaaatttatatggggtccgcatgatttggtaggacccatatgaattttaac 42029375  T
Q  262 caatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
     ||||||| | ||||||||||||||||||||||    
T  42029374 aaatcaaatacagtgtgttgaaaaatgtgtgtt 42029342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 44247621 - 44247538
Alignment:
Q  212 caaatttatatgagacccacataatttggtg-aacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    ||||||| |||| |||||||||||||||||| |||  |||||||||| ||||||||||| | ||| ||||||||||||||||||    
T  44247621 caaatttgtatgggacccacataatttggtggaacccatgtgaatttcaaccaatcaaagatagtttgttgaaaaatgtgtgtt 44247538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 16209460 - 16209375
Alignment:
Q  210 accaaatttatatgagacccacataatttggtg-aacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    |||||||||||||| |||| ||| ||||||||| |||  |||||||||||||||||| ||| ||||||||||| ||| ||||||||    
T  16209460 accaaatttatatgggaccgacaaaatttggtggaactcatgtgaattttaaccaattaaagagagtgtgttggaaagtgtgtgtt 16209375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 294
Target Start/End: Complemental strand, 42251295 - 42251163
Alignment:
Q  164 acttttcaacacacttt-tttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtga-acatatgtgaattttaac 261  Q
    ||||||||||||||| | ||||||||  ||||| | ||| | || | |||||||||||||  | ||||||||||||||||  ||  ||| ||||||||||    
T  42251295 acttttcaacacactctctttgattgattaaaattcacatgggatccaccaaatttatataggtcccacataatttggtgggacccatgcgaattttaac 42251196  T
Q  262 caatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    | |||||| ||||||||| ||||||||||||||    
T  42251195 cgatcaaagagagtgtgtcgaaaaatgtgtgtt 42251163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 291
Target Start/End: Original strand, 37810151 - 37810282
Alignment:
Q  162 atacttttcaacacacttt-tttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtga-acatatgtgaatttta 259  Q
    ||||||||||||||||| | ||||||||| || || | ||| | |||| |||||||||||||| ||||||  ||||||||||  ||  ||||||||||||    
T  37810151 atacttttcaacacactctctttgattggttataattcacatgggacccaccaaatttatatgggacccatctaatttggtgggacccatgtgaatttta 37810250  T
Q  260 accaatcaaaaagagtgtgttgaaaaatgtgt 291  Q
    ||||||||||  ||||||| || ||| |||||    
T  37810251 accaatcaaagtgagtgtgatggaaagtgtgt 37810282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 280
Target Start/End: Original strand, 4237273 - 4237375
Alignment:
Q  179 tttttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaaccaatcaaaaagagtgt 277  Q
    ||||||||||| ||||| ||||| | || | ||||||||| |||| ||||||||| ||||||| | ||  |||||||||||||| ||||||||| |||||    
T  4237273 tttttgattggttaaaatttacatgggatccaccaaatttgtatgggacccacatgatttggtggtacccatgtgaattttaactaatcaaaaaaagtgt 4237372  T
Q  278 gtt 280  Q
    |||    
T  4237373 gtt 4237375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 25666844 - 25666798
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  25666844 atgtgaattttaatcaatcaaatagagtgtgttgaaaaatgtgtgtt 25666798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 295
Target Start/End: Complemental strand, 45300407 - 45300366
Alignment:
Q  254 attttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  45300407 attttaaccaatcaaaaggagtgtgttgaaaaatgtgtgtta 45300366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 23001474 - 23001430
Alignment:
Q  250 gtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||    
T  23001474 gtgaattttaaccaatcaaagagagtatgttgaaaaatgtgtgtt 23001430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 1469785 - 1469738
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  1469785 atgtgaattttaaccaattaaatagagtgtgttgaaaaatatgtgtta 1469738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 295
Target Start/End: Original strand, 3466412 - 3466527
Alignment:
Q  181 tttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtg-aacatatgtgaattttaaccaatcaaaaagagtgtgt 279  Q
    ||||||||| ||||| | ||| |||||| |||||||| ||||| ||||||||  |||| ||| |||  |||||||||||||||||||||| ||| | |||    
T  3466412 tttgattggttaaaattcacatgagacccaccaaattcatatgggacccacacgatttagtggaacccatgtgaattttaaccaatcaaagagactatgt 3466511  T
Q  280 tgaaaaatgtgtgtta 295  Q
    |  ||| |||||||||    
T  3466512 ttgaaagtgtgtgtta 3466527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 42029435 - 42029482
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||||||    
T  42029435 atgtgaattttaaccaataaaaaaaagtgtgttgaaaagtgtgtgtta 42029482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 45300460 - 45300503
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 291  Q
    |||||||||||||||||||||||||||||| ||||||| |||||    
T  45300460 atgtgaattttaaccaatcaaaaagagtgtattgaaaagtgtgt 45300503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 42251256 - 42251302
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  42251256 atgtgaattttaatcaatcaaagagagtgtgttgaaaagtgtgtgtt 42251302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 12779511 - 12779591
Alignment:
Q  166 ttttcaacacacttttttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtgaaca 246  Q
    ||||||||||| | |||||||||| ||||| | ||| | || | |||||||| ||||| ||||||||| ||||||||||||    
T  12779511 ttttcaacacattcttttgattggttaaaattcacatgggatccaccaaattcatatgtgacccacatgatttggtgaaca 12779591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 33171692 - 33171736
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtg 292  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||||    
T  33171692 atgtgaaatttaaccaatcaaagagagtgtgttgaaaagtgtgtg 33171736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 41496106 - 41496058
Alignment:
Q  247 tatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||||||||||||||| | ||||| ||||||| |||||||||    
T  41496106 tatgtgaattttaaccaatcaaagatagtgtattgaaaagtgtgtgtta 41496058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 9430230 - 9430277
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||||||||||||| ||| | ||||||||| |||||||||    
T  9430230 atgtgaattttaaccaatcaaatagaatatgttgaaaagtgtgtgtta 9430277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 12703518 - 12703471
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||| ||||||||||||| | ||||| |||||||||||||||||    
T  12703518 atgtgaatattaaccaatcaaagaaagtgtattgaaaaatgtgtgtta 12703471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 12779547 - 12779501
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||||||||||| |||||| ||||||||||||||| |||||    
T  12779547 atgtgaattttaaccaatc-aaaagaatgtgttgaaaaatgtatgtta 12779501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 12779743 - 12779790
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||||||||| |||||||||||||||  || |||||||||    
T  12779743 atgtgaattttaaccaattaaaaagagtgtgttggtaagtgtgtgtta 12779790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 15194581 - 15194534
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||| |||||||||||||||||||||||| |||||| ||| |||||    
T  15194581 atgtgacttttaaccaatcaaaaagagtgtgctgaaaagtgtatgtta 15194534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 30841052 - 30841009
Alignment:
Q  251 tgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    ||||||||||||||||||||||||| ||||  ||||||||||||    
T  30841052 tgaattttaaccaatcaaaaagagtatgttagaaaatgtgtgtt 30841009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 292
Target Start/End: Original strand, 44487230 - 44487289
Alignment:
Q  234 aatttggtgaa-catatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtg 292  Q
    ||||||||||| | |||||||||||||||| |||||||||||||| || |||| ||||||    
T  44487230 aatttggtgaagcttatgtgaattttaaccgatcaaaaagagtgtattaaaaagtgtgtg 44487289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 2683445 - 2683515
Alignment:
Q  225 gacccacataatttggtg-aacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    ||||||||| |||||||| |||  || | |||||||||||||||||||||||||  |||||| ||||||||    
T  2683445 gacccacatgatttggtggaacccatataaattttaaccaatcaaaaagagtgtcgtgaaaagtgtgtgtt 2683515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 242
Target Start/End: Original strand, 29160898 - 29160927
Alignment:
Q  213 aaatttatatgagacccacataatttggtg 242  Q
    ||||||||||||||||||||||||||||||    
T  29160898 aaatttatatgagacccacataatttggtg 29160927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 37810192 - 37810155
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaa 285  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  37810192 atgtgaattataaccaatcaaagagagtgtgttgaaaa 37810155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Original strand, 44247631 - 44247664
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttg 281  Q
    |||||||||||||||||||||| |||||||||||    
T  44247631 atgtgaattttaaccaatcaaagagagtgtgttg 44247664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 8090931 - 8090979
Alignment:
Q  242 gaacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtg 290  Q
    |||||||||||||||||||| ||| |||  |||||||||||||| ||||    
T  8090931 gaacatatgtgaattttaacaaattaaattgagtgtgttgaaaagtgtg 8090979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 17487321 - 17487277
Alignment:
Q  251 tgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||| ||||||| |||| ||||||||||||| ||||||||||    
T  17487321 tgaatttcaaccaataaaaacgagtgtgttgaaatatgtgtgtta 17487277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 33069213 - 33069169
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtg 292  Q
    ||||||||||||||| |||||| | ||||||||||||| ||||||    
T  33069213 atgtgaattttaaccgatcaaagaaagtgtgttgaaaagtgtgtg 33069169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 35715065 - 35715109
Alignment:
Q  247 tatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 291  Q
    ||||| ||||||||||||||||| ||||||| ||||||| |||||    
T  35715065 tatgtaaattttaaccaatcaaagagagtgtattgaaaagtgtgt 35715109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 135 - 294
Target Start/End: Original strand, 3907630 - 3907793
Alignment:
Q  135 agagaaatgctatcaacacacattccaata----cttttcaacacacttttttgattggctaaaagttacacgagacctaccaaatttatatgagaccca 230  Q
    |||||||||||| |||||||||||| || |    |||||||||||||| ||| |||||| ||||| | ||| | |||| |||||||||||||| ||||||    
T  3907630 agagaaatgctagcaacacacattctaacaaacacttttcaacacactcttt-gattggttaaaattcacatgggacccaccaaatttatatgggaccca 3907728  T
Q  231 cataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    ||| ||||||||  ||  |||||||||||||||||||||||||| ||||||| |||| |||||||    
T  3907729 catgatttggtgggacccatgtgaattttaaccaatcaaaaagaatgtgttggaaaaagtgtgtt 3907793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 140 - 277
Target Start/End: Original strand, 22399749 - 22399892
Alignment:
Q  140 aatgctatcaacacacattccaatact----tttcaacacact-tttttgattggctaaaagttacacgagacctaccaaatttatatgagacccacata 234  Q
    ||||||| |||||||||||| ||||||    |||||||||||| ||||||||||| ||||| | ||| |||||| |||||||| |||||||||||| ||     
T  22399749 aatgctagcaacacacattctaatactcacttttcaacacactctttttgattggataaaattcacatgagacccaccaaattcatatgagacccagatg 22399848  T
Q  235 atttggt-gaacatatgtgaattttaaccaatcaaaaagagtgt 277  Q
    |||| || | ||  |||||||||||||||||||||| |||||||    
T  22399849 atttagtaggactcatgtgaattttaaccaatcaaagagagtgt 22399892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 294
Target Start/End: Original strand, 25545229 - 25545355
Alignment:
Q  166 ttttcaacacacttttttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtga-acatatgtgaattttaaccaa 264  Q
    ||||||||||||| ||| |||||| ||||| | ||| |||||| || ||||||||||| |||| |||| ||||||||  ||  | |||||||||||||||    
T  25545229 ttttcaacacactcttt-gattggttaaaattcacatgagacccactaaatttatatgggaccgacatgatttggtgggactcacgtgaattttaaccaa 25545327  T
Q  265 tcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    ||||| ||||||||||  ||||||||||||    
T  25545328 tcaaagagagtgtgtt--aaaatgtgtgtt 25545355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 38029621 - 38029542
Alignment:
Q  214 aatttatatgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||||| |||||| ||||||||| ||  ||||||||||||||||||||||   ||||||||| |||||||||||||    
T  38029621 aatttatatgagatccacatgatttggtgagacccatgtgaattttaaccaatcaaa---agtgtgttggaaaatgtgtgtta 38029542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 25545264 - 25545219
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  25545264 atgtgaattttaaccaatcaaa--gagtgtgttgaaaaatgtgtgtta 25545219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 28907414 - 28907367
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||||||| |||||| ||| |||||||||||||||||||||    
T  28907414 atgtgaattttaaccgatcaaagagaatgtgttgaaaaatgtgtgtta 28907367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 28943809 - 28943762
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||||||| |||||| ||| |||||||||||||||||||||    
T  28943809 atgtgaattttaaccgatcaaagagaatgtgttgaaaaatgtgtgtta 28943762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 41169483 - 41169530
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||||    
T  41169483 atgtgaattttaacggatcaaagagagtgtgttgaaaaatgtgtgtta 41169530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 43462040 - 43461961
Alignment:
Q  216 tttatatgagacccacataatttggtg-aacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    |||||||||||||||| | |||||||| |||   |||||||||||||| || ||||||||||||||  ||||||||||||    
T  43462040 tttatatgagacccacgtgatttggtggaactcgtgtgaattttaaccgattaaaaagagtgtgttagaaaatgtgtgtt 43461961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 294
Target Start/End: Original strand, 4158132 - 4158218
Alignment:
Q  209 taccaaatttatatgagacccacataatttggtgaacata-tgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    ||||||||||||||||| ||||||||||||| ||    |  ||||||||||||||||||||| ||||| | || |||||||||||||    
T  4158132 taccaaatttatatgagtcccacataatttgatgggattcgtgtgaattttaaccaatcaaagagagtatattaaaaaatgtgtgtt 4158218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 22399816 - 22399779
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaa 285  Q
    |||||||||||| |||||||||||||||||||||||||    
T  22399816 atgtgaattttatccaatcaaaaagagtgtgttgaaaa 22399779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 33420689 - 33420656
Alignment:
Q  251 tgaattttaaccaatcaaaaagagtgtgttgaaa 284  Q
    ||||||||||||||||||||||||||||||||||    
T  33420689 tgaattttaaccaatcaaaaagagtgtgttgaaa 33420656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 295
Target Start/End: Complemental strand, 42420148 - 42420016
Alignment:
Q  165 cttttcaacacacttt-tttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtga-acatatgtgaattttaacc 262  Q
    |||||||||||||| | ||||||||| ||||| | ||| |||| | | |||||||||||| || |||||| ||||||||  ||  | ||   ||||||||    
T  42420148 cttttcaacacactctatttgattggttaaaactcacatgagatccatcaaatttatatgggatccacatgatttggtgggacccacgtatgttttaacc 42420049  T
Q  263 aatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||| ||| ||| |||||||||||||||||||||    
T  42420048 aattaaagagaatgtgttgaaaaatgtgtgtta 42420016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 7721413 - 7721338
Alignment:
Q  205 gacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaaccaatcaaaaagagtgtgt 279  Q
    |||| ||||||||||||  ||||||||||||||| || | ||  ||||||| ||||||| ||||||||||||||||    
T  7721413 gacccaccaaatttatacaagacccacataatttagtaggacccatgtgaactttaacccatcaaaaagagtgtgt 7721338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 17474866 - 17474913
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||||| |||||||| || |||||||||||| |||||||||    
T  17474866 atgtgaattttaatcaatcaaagagtgtgtgttgaaaagtgtgtgtta 17474913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 42249456 - 42249409
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||| ||||||||||||| ||||| ||||||||||||||| |||||||    
T  42249456 atgtaaattttaaccaattaaaaatagtgtgttgaaaaatatgtgtta 42249409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 825105 - 825072
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttg 281  Q
    |||||||||||||||||||||| |||||||||||    
T  825105 atgtgaattttaaccaatcaaatagagtgtgttg 825072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 4190105 - 4190072
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttg 281  Q
    |||||||||||||||||||||| |||||||||||    
T  4190105 atgtgaattttaaccaatcaaagagagtgtgttg 4190072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 13122124 - 13122043
Alignment:
Q  210 accaaatttatatgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtg 290  Q
    |||||| | ||||| ||||||| |||| |||||  ||| |||||||||||| ||||||||| ||||| ||||||||| ||||    
T  13122124 accaaaataatatgggacccacgtaatatggtgggacacatgtgaattttacccaatcaaagagagtatgttgaaaagtgtg 13122043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 286
Target Start/End: Original strand, 33029548 - 33029625
Alignment:
Q  210 accaaatttatatgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaa 286  Q
    |||||||||||||||| | ||  ||||||||||  ||  |||||| |||||||| |||||| ||||||||||||||||    
T  33029548 accaaatttatatgagtcacatctaatttggtgggactcatgtgagttttaaccgatcaaagagagtgtgttgaaaaa 33029625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 36945690 - 36945609
Alignment:
Q  210 accaaatttatatgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtg 290  Q
    ||||||||||||||||||| | || ||||||||  || | |||||| || |||| ||||||||||||||||||  |||||||    
T  36945690 accaaatttatatgagacctatatgatttggtgtgacttgtgtgaaattcaaccgatcaaaaagagtgtgttggtaaatgtg 36945609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 40927699 - 40927748
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgttata 297  Q
    ||||||||||| |||||||||| | ||| ||||||||||| |||||||||    
T  40927699 atgtgaattttgaccaatcaaagatagtttgttgaaaaatttgtgttata 40927748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 42420110 - 42420147
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaa 285  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  42420110 atgtgagttttaaccaatcaaatagagtgtgttgaaaa 42420147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 3907700 - 3907655
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||||||||||  ||||||||||||||||| ||| |||||    
T  3907700 atgtgaattttaaccaatc--aaagagtgtgttgaaaagtgtttgtta 3907655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 27195298 - 27195262
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaa 284  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  27195298 atgtgaattttaatcaattaaaaagagtgtgttgaaa 27195262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 181 - 297
Target Start/End: Original strand, 12731579 - 12731696
Alignment:
Q  181 tttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtg-aacatatgtgaattttaaccaatcaaaaagagtgtgt 279  Q
    ||||||||| ||||| | ||| |||||| | ||||||||| || ||||||||| |||||||| ||  ||||| |||||||||||||||||||||||||||    
T  12731579 tttgattggttaaaattcacatgagacccatcaaatttatttgggacccacatgatttggtggaagctatgtaaattttaaccaatcaaaaagagtgtgt 12731678  T
Q  280 tgaaaaatgtgtgttata 297  Q
    || |||||||||||||||    
T  12731679 tggaaaatgtgtgttata 12731696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 1473685 - 1473618
Alignment:
Q  225 gacccacataatttggtg-aacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 291  Q
    ||||||||| |||||||| |||  |||||||||||||||||||||| | |||||||||||||||||||    
T  1473685 gacccacatgatttggtggaacccatgtgaattttaaccaatcaaagatagtgtgttgaaaaatgtgt 1473618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 11651004 - 11650916
Alignment:
Q  181 tttgattggct-aaaagttacacgagacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaaccaatca 267  Q
    ||||||||||| |||| ||||| | |||| |||||||||||||| ||||||||||||||||| | |   ||||||||||||||||||||    
T  11651004 tttgattggcttaaaatttacatgggacccaccaaatttatatgggacccacataatttggtgggatccatgtgaattttaaccaatca 11650916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 9645006 - 9645057
Alignment:
Q  244 acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| | |||||||    
T  9645006 acatatgtgaattttaaccaatcaaaaagattgtgttggaaagtatgtgtta 9645057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 9651023 - 9651074
Alignment:
Q  244 acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||||||||||||||||||||| ||||||| ||| | |||||||    
T  9651023 acatatgtgaattttaaccaatcaaaaagattgtgttggaaagtatgtgtta 9651074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 295
Target Start/End: Original strand, 4033043 - 4033132
Alignment:
Q  212 caaatttatatgagacccacataatttggtga------acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||| |||||||||||||||||||      ||   ||||||||||||||||||||| | ||||| ||||||| |||||||||    
T  4033043 caaatttatatgggacccacataatttggtgagatgagactcgtgtgaattttaaccaatcaaagatagtgtattgaaaagtgtgtgtta 4033132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 291
Target Start/End: Original strand, 6643369 - 6643451
Alignment:
Q  210 accaaatttatatgagacccacataatttggt-gaacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 291  Q
    |||||||||||||| ||||||||| ||||||| | || ||| ||||||||||||||||||| |  |||||||| | |||||||    
T  6643369 accaaatttatatgggacccacatgatttggtgggacctatatgaattttaaccaatcaaagaccgtgtgttggataatgtgt 6643451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 289
Target Start/End: Complemental strand, 24110106 - 24110068
Alignment:
Q  251 tgaattttaaccaatcaaaaagagtgtgttgaaaaatgt 289  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  24110106 tgaattttaaccaatcaaagagagtgtgttgaaaaatgt 24110068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 4494438 - 4494397
Alignment:
Q  250 gtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 291  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  4494438 gtgaattttaaccaatcaaagaaagtgtgttgaaaaatgtgt 4494397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 17389991 - 17390037
Alignment:
Q  249 tgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||||||||||||| |||| |||||||||| || ||||||    
T  17389991 tgtgaattttaaccaatcaaagagagagtgttgaaaattgcgtgtta 17390037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 479849 - 479808
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgt 289  Q
    |||||||||||||||||||||| | ||||| |||||||||||    
T  479849 atgtgaattttaaccaatcaaataaagtgttttgaaaaatgt 479808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 3150294 - 3150209
Alignment:
Q  210 accaaatttatatgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    ||||||||||||||  | |||||| ||||||||  ||  |||||||||||||||||| |||||  || ||||||||||| ||||||    
T  3150294 accaaatttatatggaatccacatgatttggtgggacccatgtgaattttaaccaattaaaaattgtctgttgaaaaatatgtgtt 3150209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 24783959 - 24784008
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgttata 297  Q
    |||| |||||||| |||||||| | |||||||| ||||||||||||||||    
T  24783959 atgtaaattttaatcaatcaaagatagtgtgttaaaaaatgtgtgttata 24784008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 31054737 - 31054684
Alignment:
Q  212 caaatttatatgagacccacataatttggtg-aacatatgtgaattttaaccaa 264  Q
    ||||||||||||||||||||||||||| |||  ||  |||||||||||||||||    
T  31054737 caaatttatatgagacccacataatttagtgtgacgcatgtgaattttaaccaa 31054684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 6643362 - 6643318
Alignment:
Q  247 tatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 291  Q
    ||||||||||||||||||||||  |||||||||| ||| ||||||    
T  6643362 tatgtgaattttaaccaatcaatgagagtgtgttaaaatatgtgt 6643318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 12424935 - 12424892
Alignment:
Q  251 tgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||||||| ||||| ||||||||||||| |||||||||    
T  12424935 tgaattttaaccaataaaaaa-agtgtgttgaaaagtgtgtgtta 12424892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 31946914 - 31946958
Alignment:
Q  251 tgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||| || |||||| |||||||||||| |||||||||    
T  31946914 tgaattttaaccgataaaaaagtgtgtgttgaaaagtgtgtgtta 31946958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 166 - 295
Target Start/End: Original strand, 21433882 - 21434013
Alignment:
Q  166 ttttcaacacacttt-tttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaacca 263  Q
    ||||||||||||| | ||||||||| ||||| | ||| |||||| |||||||||||||||||||||||| ||||||| | |   ||||||||||||||||    
T  21433882 ttttcaacacactctctttgattggttaaaattcacatgagacccaccaaatttatatgagacccacatgatttggtgggatccatgtgaattttaacca 21433981  T
Q  264 atcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||  ||||||||||||||| ||| |||||    
T  21433982 atcaatgagagtgtgttgaaaagtgtatgtta 21434013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 295
Target Start/End: Original strand, 45654020 - 45654151
Alignment:
Q  164 acttttcaacacacttttttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaacc 262  Q
    ||||||||||||||| |||||||||| ||||  ||| | |||||||| |||||||||||| ||||||||| ||||| | | |   |||||||||||||||    
T  45654020 acttttcaacacactcttttgattggttaaat-ttatatgagacctatcaaatttatatgggacccacatgatttgatgggatccatgtgaattttaacc 45654118  T
Q  263 aatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||| |||||||| |||||| |||||||    
T  45654119 aatcaaaaaaagtgtgttaaaaaatatgtgtta 45654151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 291
Target Start/End: Complemental strand, 31758779 - 31758690
Alignment:
Q  203 gagacctaccaaatttatatgagacccacataatttggtgaa-catatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 291  Q
    |||||| |||||||||| ||||||||||||| |||||||| | | ||||||||||||||||||||||| ||| ||||||||||| |||||    
T  31758779 gagacccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaatcaaatagaatgtgttgaaaagtgtgt 31758690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 191 - 295
Target Start/End: Complemental strand, 2324862 - 2324757
Alignment:
Q  191 taaaagttacacgagacctaccaaatttatatgagacccacataatttggtg-aacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgt 289  Q
    ||||| ||||| | |||| |||||||||||||| ||||||||| |||||||| |||  |||||||||||||||||||||| ||||| | ||||||| |||    
T  2324862 taaaatttacatgggacccaccaaatttatatgggacccacatgatttggtgaaactcatgtgaattttaaccaatcaaagagagtatattgaaaagtgt 2324763  T
Q  290 gtgtta 295  Q
    | ||||    
T  2324762 gcgtta 2324757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 294
Target Start/End: Complemental strand, 3688735 - 3688570
Alignment:
Q  136 gagaaatgctatcaacacacattccaat----acttttcaacacacttt-tttgattggctaaaagttacacgagaccta-ccaaatttatatgagaccc 229  Q
    ||||||||||| |||||||||||  |||    ||||| ||||||||||| ||||||||| ||||| | ||| | |||| | | ||| ||||||| |||||    
T  3688735 gagaaatgctaacaacacacattttaatatacactttccaacacactttctttgattggttaaaattcacatgtgacccatctaaaattatatgggaccc 3688636  T
Q  230 acataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    |||| ||||||||| ||  |||||||||||||| ||||||| | | ||||||||||||||||||||    
T  3688635 acatgatttggtgagacccatgtgaattttaactaatcaaagaaaatgtgttgaaaaatgtgtgtt 3688570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 21433919 - 21433872
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  21433919 atgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgtta 21433872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 52375010 - 52375056
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  52375010 atgtgaattttaaccaatcaaaaagagtgtattgaaaaatgtgtgtt 52375056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 295
Target Start/End: Complemental strand, 15134699 - 15134566
Alignment:
Q  164 acttttcaacacacttttt-tgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaac 261  Q
    ||||||||||||||| | | ||||||| ||||| | ||| | |||  |||||||||||||| |||||| || |||| || | ||  ||||||||||||||    
T  15134699 acttttcaacacactgtctgtgattggttaaaattcacatgggactcaccaaatttatatgggacccaaatgatttagtcggacccatgtgaattttaac 15134600  T
Q  262 caatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||| ||| ||| |||||||||||||||||||||    
T  15134599 caataaaagagaatgtgttgaaaaatgtgtgtta 15134566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 294
Target Start/End: Complemental strand, 16458012 - 16457920
Alignment:
Q  203 gagacctaccaaatttatatgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    |||||| |||||||||||||| ||||||||| ||||| ||  |   |||||||||||||||||||||| ||||||||||  ||||||||||||    
T  16458012 gagacccaccaaatttatatgggacccacatgatttgatgggatccatgtgaattttaaccaatcaaagagagtgtgttagaaaatgtgtgtt 16457920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 34119686 - 34119626
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta-tatcatttctct 307  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| || |||||||||    
T  34119686 atgtgaattttaaccgatcaaaacgagtgtgttgaaaaatgtgtgttactagcatttctct 34119626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 52375000 - 52374916
Alignment:
Q  212 caaatttatatgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||| | ||||||||||||||||||| |   ||||||||||||| | |||||| ||||||||||||||| |||||||||    
T  52375000 caaatttatacgggacccacataatttggtgagatccatgtgaattttaatctatcaaagagagtgtgttgaaaagtgtgtgtta 52374916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 33414049 - 33414002
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  33414049 atgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgtta 33414002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 38036349 - 38036244
Alignment:
Q  181 tttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtgaacatatgtgaattttaaccaatcaaaaagagtgtgtt 280  Q
    ||||||| | ||||| | ||| |||||| | ||||||||||||  ||||||||||||||| || |  |||||||||||||||||||||| | | ||||||    
T  38036349 tttgatttgttaaaattcacatgagacccaacaaatttatatggaacccacataatttgggga-ctcatgtgaattttaaccaatcaaagaaaatgtgtt 38036251  T
Q  281 gaaaaat 287  Q
    |||||||    
T  38036250 gaaaaat 38036244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 7403176 - 7403223
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||||||||||||| ||||||||||||| | |||||||||    
T  7403176 atgtgaattttaaccaatcaaagagagtgtgttgaatagtgtgtgtta 7403223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 32286324 - 32286363
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaat 287  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  32286324 atgtgaattttaaccaataaaaaagagtgtgttgaaaaat 32286363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 17508806 - 17508764
Alignment:
Q  253 aattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  17508806 aattttaataaatcaaaaagagtgtgttgaaaaatgtgtgtta 17508764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 291
Target Start/End: Complemental strand, 24976316 - 24976234
Alignment:
Q  210 accaaatttatatgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 291  Q
    |||||||| ||||| ||||||||| ||||| | | |  |||||||||||| | |||||||||||||| |||||||||||||||    
T  24976316 accaaattcatatgggacccacatgatttgtttagatctatgtgaatttttaacaatcaaaaagagtttgttgaaaaatgtgt 24976234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 41840685 - 41840731
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    |||||||||||||||||||||| ||||||||||||| ||| ||||||    
T  41840685 atgtgaattttaaccaatcaaatagagtgtgttgaacaatatgtgtt 41840731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 17181268 - 17181333
Alignment:
Q  205 gacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaaccaatcaaa 269  Q
    |||| |||||||||||||||||||||| | ||||||| | || ||||||||||||||| |||||||    
T  17181268 gacccaccaaatttatatgagacccacgtgatttggtgggacctatgtgaattttaactaatcaaa 17181333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 16577300 - 16577252
Alignment:
Q  247 tatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||| ||||||||| ||||||| ||| |||||||||||||||||||||    
T  16577300 tatgtaaattttaacaaatcaaacagaatgtgttgaaaaatgtgtgtta 16577252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 993263 - 993219
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    ||||||||||||||||||||||  ||||||||||||| |||||||||    
T  993263 atgtgaattttaaccaatcaaa--gagtgtgttgaaagatgtgtgtt 993219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 19382343 - 19382300
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 291  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||    
T  19382343 atgtgaattttaaccaatcaaatagagtgtgttggaaagtgtgt 19382300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 41840639 - 41840592
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||    
T  41840639 atgtaaattttaatcaatcaaagagagtgtgttgaaaaatatgtgtta 41840592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 2247625 - 2247579
Alignment:
Q  249 tgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||| |||| ||| ||||||||||||||| |||||||||    
T  2247625 tgtgaattttaatcaattaaagagagtgtgttgaaaagtgtgtgtta 2247579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 1338477 - 1338432
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||| ||||||||||||||| |||||||  ||||||||||||||||    
T  1338477 atgtgatttttaaccaatcaaagagagtgt--tgaaaaatgtgtgtta 1338432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 19382390 - 19382422
Alignment:
Q  253 aattttaaccaatcaaaaagagtgtgttgaaaa 285  Q
    |||||||||||||||||||||||||||| ||||    
T  19382390 aattttaaccaatcaaaaagagtgtgttaaaaa 19382422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 24321186 - 24321121
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt-atatcatttctctaccaaaa 314  Q
    |||| |||||||| |||||||||||||| ||||  |||||||||||| ||| |||||||| |||||||    
T  24321186 atgtaaattttaatcaatcaaaaagagtatgtt--aaaatgtgtgttaatagcatttctcaaccaaaa 24321121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 7017140 - 7017225
Alignment:
Q  210 accaaatttatatgagacccacataatttggt-gaacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    |||||||||||||| || |||||||||||||| | || ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  7017140 accaaatttatatgggatccacataatttggtaggacttatgtgaattttaaccaatcaaagagagtgtattgaaaaatgtgtgtt 7017225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 7032498 - 7032583
Alignment:
Q  210 accaaatttatatgagacccacataatttggt-gaacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    |||||||||||||| || |||||||||||||| | || ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  7032498 accaaatttatatgggatccacataatttggtaggacttatgtgaattttaaccaatcaaagagagtgtattgaaaaatgtgtgtt 7032583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 5443591 - 5443669
Alignment:
Q  217 ttatatgagacccacataatttggtgaacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||| || ||||||||||||||| |  ||||||||||||||||||||||| | ||| |||||||||||||||||||    
T  5443591 ttatatgggatccacataatttggtggagctatgtgaattttaaccaatcaaagaaagtatgttgaaaaatgtgtgtta 5443669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 135 - 295
Target Start/End: Original strand, 12275714 - 12275878
Alignment:
Q  135 agagaaatgctatcaacacacattccaatac--ttttcaacacacttttttga-ttggctaaaagttacacgagacctaccaaatttatatgagacccac 231  Q
    |||||||||||| |||||||||||| || ||  ||| ||||||||| | || | |||| ||||| | ||| | |||| |||||||||||||| |||||||    
T  12275714 agagaaatgctagcaacacacattctaacacactttccaacacactctcttcaattggttaaaaatcacatgggacccaccaaatttatatgggacccac 12275813  T
Q  232 ataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    || ||||||||  ||  || |||||||||||||||| || ||||||||||| ||| |||||||||    
T  12275814 atgatttggtgggacccatatgaattttaaccaatcgaagagagtgtgttggaaagtgtgtgtta 12275878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 179 - 291
Target Start/End: Original strand, 26647714 - 26647826
Alignment:
Q  179 tttttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaaccaatcaaaaagagtgt 277  Q
    ||||| ||||| ||||| | ||| ||||| || |||| ||||||||||||||| ||||||| | |||| |||||||||| |||||||||||||| |||||    
T  26647714 tttttcattggttaaaattcacatgagac-tatcaaaattatatgagacccacgtaatttgatagaacttatgtgaattctaaccaatcaaaaatagtgt 26647812  T
Q  278 gttgaaaaatgtgt 291  Q
    |||||||| |||||    
T  26647813 gttgaaaagtgtgt 26647826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 207 - 295
Target Start/End: Original strand, 49106957 - 49107045
Alignment:
Q  207 cctaccaaatttatatgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||||||||| | ||| ||| ||||||||  || ||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  49106957 cctaccaaatttatatg-gtcccgcatgatttggtgggacctatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgtta 49107045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 295
Target Start/End: Original strand, 40134435 - 40134524
Alignment:
Q  205 gacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||||||||||| ||||||||||||||||| | ||  |||||||||||||||||||  | ||||||||||| ||| |||||||||    
T  40134435 gacctaccaaatttatatgggacccacataatttggtgggacccatgtgaattttaaccaatc--agagagtgtgttggaaagtgtgtgtta 40134524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 5452636 - 5452714
Alignment:
Q  217 ttatatgagacccacataatttggtgaacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||| || |||||||||| |||| |  ||||||||||||||||||||||| | ||| |||||||||||||||||||    
T  5452636 ttatatgggatccacataattgggtggagctatgtgaattttaaccaatcaaagaaagtatgttgaaaaatgtgtgtta 5452714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 181 - 281
Target Start/End: Original strand, 3235584 - 3235685
Alignment:
Q  181 tttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaaccaatcaaaaagagtgtgt 279  Q
    ||||||||| ||||| | ||| |||||| | |||||||| ||| |||||||||| || ||| | ||  ||||||||||||||||||||||||||||||||    
T  3235584 tttgattggttaaaattcacatgagacccatcaaatttacatgggacccacatatttgggtcggacccatgtgaattttaaccaatcaaaaagagtgtgt 3235683  T
Q  280 tg 281  Q
    ||    
T  3235684 tg 3235685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 203 - 295
Target Start/End: Original strand, 47497747 - 47497840
Alignment:
Q  203 gagacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||| ||||||||| |||| ||||||||||||||||| | ||  |||||||||||||||||||||| | | | | |||||||||||||||||    
T  47497747 gagacccaccaaatttgtatgggacccacataatttggtgggactcatgtgaattttaaccaatcaaagaaaatatattgaaaaatgtgtgtta 47497840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 2276323 - 2276276
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  2276323 atgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgtta 2276276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 294
Target Start/End: Complemental strand, 11201385 - 11201293
Alignment:
Q  203 gagacctaccaaatttatatgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    |||||| | |||||||||||||||||||| | ||||||||  ||  |||||||||||||| ||| ||| ||||||||||| ||| ||||||||    
T  11201385 gagacccatcaaatttatatgagacccacgtgatttggtgggacccatgtgaattttaactaatgaaagagagtgtgttggaaagtgtgtgtt 11201293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 7526172 - 7526243
Alignment:
Q  210 accaaatttatatgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgtt 280  Q
    |||||||||||||||||||  ||| ||||||||| ||| |||| ||||||||||||||||||| | ||||||    
T  7526172 accaaatttatatgagaccagcatgatttggtgagacacatgtaaattttaaccaatcaaaaaaaatgtgtt 7526243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 10056669 - 10056622
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||| |||||||||||||||||||||||||| | |||||||    
T  10056669 atgtgaattttgaccaatcaaaaagagtgtgttgaaaagtatgtgtta 10056622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 26647737 - 26647690
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||||||||| ||||||| | |||||||||||||||||||    
T  26647737 atgtgaattttaaccaatgaaaaagactatgttgaaaaatgtgtgtta 26647690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 295
Target Start/End: Original strand, 316413 - 316499
Alignment:
Q  210 accaaatttatatgagacccacataatttggtg-aacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||| |||||||||||| | |||| ||| |||  ||||  |||||| ||||||||| ||| |||||||||||||||||||||    
T  316413 accaaatttgtatgagacccacttgatttagtggaactcatgtagattttatccaatcaaagagaatgtgttgaaaaatgtgtgtta 316499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 291
Target Start/End: Original strand, 18089756 - 18089838
Alignment:
Q  210 accaaatttatatgagacccacataatttggt-gaacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 291  Q
    |||||||||||||| |  |||||||||||||| | ||  ||||||||||||||||| |||| |||||||||| |||| |||||    
T  18089756 accaaatttatatgggttccacataatttggttggacccatgtgaattttaaccaaccaaagagagtgtgttaaaaagtgtgt 18089838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 3235605 - 3235558
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||||||||||||| ||||||| ||| ||| |||||||||    
T  3235605 atgtgaattttaaccaatcaaagagagtgtattggaaagtgtgtgtta 3235558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 26862959 - 26862902
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt-atatcatttctc 306  Q
    |||||||||||||||||||||  ||||||||||  |||||||||||| ||| ||||||||    
T  26862959 atgtgaattttaaccaatcaaggagagtgtgtt--aaaatgtgtgttgataacatttctc 26862902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 296
Target Start/End: Original strand, 40175900 - 40176035
Alignment:
Q  164 acttttcaacacacttttttg--attggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtga-acatatgtgaattttaa 260  Q
    ||||||||||||||||||||   ||||| ||||| | ||| | || | |||||||||||||| ||||||||||||||||||  ||  |||||||||||||    
T  40175900 acttttcaacacactttttttttattggttaaaattcacatgggatccaccaaatttatatgggacccacataatttggtgggacccatgtgaattttaa 40175999  T
Q  261 ccaatcaaaaagagtgtgttgaaaaatgtgtgttat 296  Q
    ||||| |||| ||||||||| |||| ||||||||||    
T  40176000 ccaattaaaaggagtgtgttaaaaagtgtgtgttat 40176035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 295
Target Start/End: Original strand, 34504386 - 34504517
Alignment:
Q  166 ttttcaacacact-tttttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtga-acatatgtgaattttaacca 263  Q
    ||||||||||||| ||||||||||| ||||| | ||| |  ||  |||||||||||||| ||||||||| ||||||||  ||  ||| ||||||||||||    
T  34504386 ttttcaacacactctttttgattggttaaaattcacatggaactcaccaaatttatatgggacccacatgatttggtgtgacccatgcgaattttaacca 34504485  T
Q  264 atcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||| ||||||||||||| ||| |||||    
T  34504486 atcaaaaaaagtgtgttgaaaagtgtatgtta 34504517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 125 - 294
Target Start/End: Complemental strand, 4994328 - 4994155
Alignment:
Q  125 caatataaaaagagaaatgctatcaacacacattccaatac----ttttcaacacacttttttgattggctaaaagttacacgagacctaccaaatttat 220  Q
    ||||||||||||||||| |||| |||||||||||  || ||    |||| |||||||| ||| |||||| ||||| ||  | |||||| || ||||||||    
T  4994328 caatataaaaagagaaacgctagcaacacacattttaacacacaatttttaacacactcttt-gattggttaaaatttgtatgagacccacaaaatttat 4994230  T
Q  221 atgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    ||| ||||||||| ||||||||  ||  ||  |||||||||||||||||||||||| |||| |||||| ||||||    
T  4994229 atgggacccacatgatttggtgggactcataagaattttaaccaatcaaaaagagtatgttaaaaaatatgtgtt 4994155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 42072776 - 42072671
Alignment:
Q  179 tttttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaaccaatcaaaaagagtgt 277  Q
    ||||| ||||| ||||| ||||| | |||| ||||||||||||||||||||| || ||||||| | ||  |||||||| ||||||||||||| |||||||    
T  42072776 ttttttattggttaaaatttacatgggacccaccaaatttatatgagacccatatgatttggtgggacccatgtgaatgttaaccaatcaaagagagtgt 42072677  T
Q  278 gttgaa 283  Q
    ||||||    
T  42072676 gttgaa 42072671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 289
Target Start/End: Complemental strand, 27072947 - 27072821
Alignment:
Q  164 acttttcaacacact-tttttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtga-acatatgtgaattttaac 261  Q
    ||||||||||||| | ||||||||||| ||||| |||||   |||| |||||||||||||| || |||||| ||||||||| || ||  |||||||||||    
T  27072947 acttttcaacacattctttttgattggttaaaatttacattggacccaccaaatttatatgggatccacatgatttggtgagacctacatgaattttaac 27072848  T
Q  262 caatcaaaaagagtgtgttgaaaaatgt 289  Q
    |||| ||||| ||| |||||||||||||    
T  27072847 caat-aaaaaaagtatgttgaaaaatgt 27072821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 26018504 - 26018601
Alignment:
Q  200 cacgagacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaaccaatcaa--aaagagtgtgttgaaaaatgtgtgtt 294  Q
    ||||||||| |||||||||||||| ||||||||||||||| | | ||  |||||||||||||||||||||  | || |||||||| ||||||||||||    
T  26018504 cacgagacccaccaaatttatatgggacccacataatttgatgggacccatgtgaattttaaccaatcaaggagagtgtgtgttggaaaatgtgtgtt 26018601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 34504423 - 34504384
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaat 287  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34504423 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaat 34504384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 40566549 - 40566596
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||    
T  40566549 atgtgaattttaaccaatcaaaaagagcgtgttgaaaaatatgtgtta 40566596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 295
Target Start/End: Original strand, 40694638 - 40694753
Alignment:
Q  181 tttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgt 279  Q
    ||||||||| ||||| | ||| | |||| ||||||| |||||  ||||||||| ||||||||  ||  |||||||||||||| ||| ||||||||||| |    
T  40694638 tttgattggttaaaattaacatgcgacccaccaaatctatataggacccacatgatttggtgggacccatgtgaattttaactaataaaaaagagtgtat 40694737  T
Q  280 tgaaaaatgtgtgtta 295  Q
    |||||| |||||||||    
T  40694738 tgaaaagtgtgtgtta 40694753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 295
Target Start/End: Complemental strand, 2288773 - 2288598
Alignment:
Q  126 aatataaaaagagaaatgctatcaacacacattccaata----cttttcaacacacttt-tttgattggctaaaagttacacgagacctaccaaatttat 220  Q
    ||||| ||||||||||||||| |||||||||||| || |    ||||||||||  || | ||||||||| ||||| | ||| | || | | |||||||||    
T  2288773 aatattaaaagagaaatgctagcaacacacattctaaaagacacttttcaacaatctctctttgattggttaaaattcacatgggatccatcaaatttat 2288674  T
Q  221 atgagacccacataatttggtgaa-catatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||| ||||||  | |||||||||| |  |||| ||||||||||||||||| ||||||||||  ||| |||||||||    
T  2288673 atgggacccatgtgatttggtgaaacccatgtaaattttaaccaatcaaagagagtgtgttcgaaagtgtgtgtta 2288598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 27072908 - 27072955
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||| ||||||||||||||||||||| ||||||||||| |||||||||    
T  27072908 atgtaaattttaaccaatcaaaaagaatgtgttgaaaagtgtgtgtta 27072955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 38835087 - 38835010
Alignment:
Q  208 ctaccaaatttatatgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgttgaaa 284  Q
    |||||||||||||||| ||||| ||| ||||||||| ||  ||||||||||||  |||||||| ||| ||||||||||    
T  38835087 ctaccaaatttatatgggacccgcatgatttggtgagacccatgtgaattttagtcaatcaaagagaatgtgttgaaa 38835010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 20271106 - 20271153
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||||| ||||||| ||||||||||||||| || ||||||    
T  20271106 atgtgaattttaactaatcaaagagagtgtgttgaaaagtgcgtgtta 20271153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 21057734 - 21057781
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||||| ||||||| ||||||||||||||| || ||||||    
T  21057734 atgtgaattttaactaatcaaagagagtgtgttgaaaagtgcgtgtta 21057781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 36009915 - 36009962
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||||||||| |||| ||||||||||| ||| |||||||||    
T  36009915 atgtgaattttaaccaaccaaagagagtgtgttggaaagtgtgtgtta 36009962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 38835092 - 38835134
Alignment:
Q  247 tatgtgaattttaaccaatcaaaaagag--tgtgttgaaaaat 287  Q
    ||||||||||||||||||||||||||||  |||||||||||||    
T  38835092 tatgtgaattttaaccaatcaaaaagagaatgtgttgaaaaat 38835134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 40694659 - 40694612
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||| ||||||||||||||||| ||| ||||||| |||||||||||||    
T  40694659 atgttaattttaaccaatcaaatagattgtgttgtaaaatgtgtgtta 40694612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 285
Target Start/End: Original strand, 43042234 - 43042268
Alignment:
Q  251 tgaattttaaccaatcaaaaagagtgtgttgaaaa 285  Q
    ||||||||||||||||||||||||||| |||||||    
T  43042234 tgaattttaaccaatcaaaaagagtgtattgaaaa 43042268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 40696234 - 40696201
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttg 281  Q
    |||||||||||||| |||||||||||||||||||    
T  40696234 atgtgaattttaactaatcaaaaagagtgtgttg 40696201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 35586495 - 35586543
Alignment:
Q  247 tatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||||| |||| ||| ||| ||||||||||| |||||||||    
T  35586495 tatgtgaattttaatcaattaaagagaatgtgttgaaaagtgtgtgtta 35586543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 166 - 292
Target Start/End: Complemental strand, 32881127 - 32880999
Alignment:
Q  166 ttttcaacacact-tttttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaacca 263  Q
    ||||||||||| | ||||| ||||| ||||| |||||||||||| |||||||||||||| || |||||| |||| || | ||  |||||||| |||||||    
T  32881127 ttttcaacacaatcttttttattggttaaaatttacacgagacccaccaaatttatatgggatccacatgattttgtgggacccatgtgaatattaacca 32881028  T
Q  264 atcaaaaagagtgtgttgaaaaatgtgtg 292  Q
    |||||  ||||| ||||||||||||||||    
T  32881027 atcaaggagagtatgttgaaaaatgtgtg 32880999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 294
Target Start/End: Original strand, 11532458 - 11532574
Alignment:
Q  179 tttttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtg-aacatatgtgaattttaaccaatcaaaaagagtgt 277  Q
    |||||||||||  |||| | |||| ||||| || ||||||||||| || |||||| |||||||| |||  |||||||||||||||||||||| |||||||    
T  11532458 tttttgattggtcaaaattcacacaagacccactaaatttatatgggatccacatgatttggtggaacccatgtgaattttaaccaatcaaagagagtgt 11532557  T
Q  278 gttgaaaaatgtgtgtt 294  Q
    |||  ||| ||||||||    
T  11532558 gttagaaagtgtgtgtt 11532574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 181 - 295
Target Start/End: Complemental strand, 31205483 - 31205368
Alignment:
Q  181 tttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgt 279  Q
    |||||||||  |||| | ||| |||||| ||||| |||||||| ||||||||| ||||||| | ||  |||| ||||||||||||||||| |||||||||    
T  31205483 tttgattggtcaaaattcacatgagacccaccaattttatatgggacccacatgatttggtaagacccatgtaaattttaaccaatcaaagagagtgtgt 31205384  T
Q  280 tgaaaaatgtgtgtta 295  Q
    || ||||| |||||||    
T  31205383 tggaaaatatgtgtta 31205368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 279
Target Start/End: Original strand, 35357290 - 35357441
Alignment:
Q  134 aagagaaatgctatcaacacacattccaa----tacttttcaacacacttt-tttgattggctaaaagttacacgagacctaccaaatttatatgagacc 228  Q
    ||||||||||||| |||||||||||| ||    || ||||||||||||| | ||||||||| ||||| | ||| | || | |||||||||||||| |||     
T  35357290 aagagaaatgctagcaacacacattctaacaaatatttttcaacacactctctttgattggttaaaactcacatgtgaaccaccaaatttatatgggact 35357389  T
Q  229 cacataatttggt-gaacatatgtgaattttaaccaatcaaaaagagtgtgt 279  Q
     |||| ||||||| | ||  |||||||||||||||||||||| |||||||||    
T  35357390 tacatgatttggtaggacccatgtgaattttaaccaatcaaagagagtgtgt 35357441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 166 - 281
Target Start/End: Original strand, 14345160 - 14345277
Alignment:
Q  166 ttttcaacacacttt-tttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaacca 263  Q
    ||||||||||||||| ||||||||| |||||   ||| |||||| |||||||||||||| ||||||||| ||||||| | |   |||||||||||||| |    
T  14345160 ttttcaacacactttctttgattggttaaaatccacatgagacccaccaaatttatatgggacccacatgatttggtgggattcatgtgaattttaacga 14345259  T
Q  264 atcaaaaagagtgtgttg 281  Q
    || || ||||||||||||    
T  14345260 ataaagaagagtgtgttg 14345277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 295
Target Start/End: Original strand, 36480715 - 36480847
Alignment:
Q  165 cttttcaacacacttt-tttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtga-acatatgtgaattttaacc 262  Q
    |||| ||||||||| | ||||||||| ||||| | ||| | |||| | |||||||||||| ||||||||| ||||||||  ||  |||||||||||| ||    
T  36480715 ctttccaacacactctctttgattggttaaaattcacatgggacccaacaaatttatatgggacccacatgatttggtgggacccatgtgaattttagcc 36480814  T
Q  263 aatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||| ||||  ||||||||| |||||||||    
T  36480815 aatcaaagagagaatgttgaaaagtgtgtgtta 36480847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 37341305 - 37341245
Alignment:
Q  213 aaatttatatgagacccacataatttggtgaacatatgtgaattttaaccaatcaaaaaga 273  Q
    ||||||||||||||||||||| |||||||| ||  |||||||||||||| |||||||||||    
T  37341305 aaatttatatgagacccacatgatttggtggacccatgtgaattttaactaatcaaaaaga 37341245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 3901586 - 3901633
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  3901586 atgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgtta 3901633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 295
Target Start/End: Original strand, 51541254 - 51541385
Alignment:
Q  166 ttttcaacacact-tttttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtga-acatatgtgaattttaacca 263  Q
    ||||||| ||||| ||||||||||| ||||| | ||| | |||| ||||||  |||||  ||||||||| ||||||||  ||  || |||||||||||||    
T  51541254 ttttcaatacactatttttgattggttaaaactcacatgtgacccaccaaaagtatataggacccacatgatttggtgggactcatctgaattttaacca 51541353  T
Q  264 atcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||| ||||| ||||||||| |||||||    
T  51541354 atcaaaaaaagtgtattgaaaaatatgtgtta 51541385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 44890430 - 44890476
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||    
T  44890430 atgtaaattttaaccaatcaaaaagagtgtgttgaaaaatgtatgtt 44890476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 294
Target Start/End: Original strand, 19560729 - 19560768
Alignment:
Q  255 ttttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  19560729 ttttaaccaatcaaagagagtgtgttgaaaaatgtgtgtt 19560768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 3901545 - 3901499
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    |||||||||||||||||||||| ||| ||||||||||||| ||||||    
T  3901545 atgtgaattttaaccaatcaaagagaatgtgttgaaaaatatgtgtt 3901499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 19158744 - 19158682
Alignment:
Q  210 accaaatttatatgagacccacataatttggt-gaacatatgtgaattttaaccaatcaaaaa 271  Q
    ||||||||||||||| ||||||||||||| || | ||  ||||||||||||||||||||||||    
T  19158744 accaaatttatatgaaacccacataatttagtgggactcatgtgaattttaaccaatcaaaaa 19158682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 29955121 - 29955047
Alignment:
Q  212 caaatttatatgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaa 285  Q
    ||||||||| || ||||||||| ||||| ||  ||  |||||||||||||||||||||||| |||||||||||||    
T  29955121 caaatttatgtgggacccacatgatttgatgggacccatgtgaattttaaccaatcaaaaaaagtgtgttgaaaa 29955047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 30004275 - 30004201
Alignment:
Q  212 caaatttatatgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaa 285  Q
    ||||||||| || ||||||||| ||||| ||  ||  |||||||||||||||||||||||| |||||||||||||    
T  30004275 caaatttatgtgggacccacatgatttgatgggacccatgtgaattttaaccaatcaaaaaaagtgtgttgaaaa 30004201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 32881095 - 32881136
Alignment:
Q  253 aattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    ||||||||||||| ||||||| ||||||||||||||||||||    
T  32881095 aattttaaccaataaaaaagattgtgttgaaaaatgtgtgtt 32881136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 1753398 - 1753315
Alignment:
Q  213 aaatttatatgagacccacataatttggtgaacat-atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||| || |||||| ||||| ||||  | |||| ||||||||||||||||||||||| | ||||||| ||| |||||    
T  1753398 aaatttatatgggaaccacatgatttgatgaaactcatgtaaattttaaccaatcaaaaagagtatattgaaaagtgtatgtta 1753315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 14345197 - 14345150
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||| |||||||||||||||| | ||||||||||||||| |||||||    
T  14345197 atgtggattttaaccaatcaaagaaagtgtgttgaaaaatatgtgtta 14345150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 35357363 - 35357324
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaat 287  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  35357363 atgtgagttttaaccaatcaaagagagtgtgttgaaaaat 35357324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 36480753 - 36480706
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||||||||||||| ||||||||||| |||  ||||||||    
T  36480753 atgtgaattttaaccaatcaaagagagtgtgttggaaagggtgtgtta 36480706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 799306 - 799260
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    |||||||||| ||||||| ||| |||| |||||||||||||||||||    
T  799306 atgtgaatttaaaccaattaaagagagcgtgttgaaaaatgtgtgtt 799260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 40554131 - 40554177
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    |||||| ||||||||||||||| ||||||| ||||||| ||||||||    
T  40554131 atgtgagttttaaccaatcaaagagagtgtattgaaaattgtgtgtt 40554177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 37189237 - 37189278
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgt 289  Q
    |||||||||||||||||||||| ||||| |||| ||||||||    
T  37189237 atgtgaattttaaccaatcaaagagagtctgttaaaaaatgt 37189278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 51541291 - 51541250
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgt 289  Q
    |||||| ||||||||||||||||| ||||| |||||||||||    
T  51541291 atgtgagttttaaccaatcaaaaatagtgtattgaaaaatgt 51541250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 1458633 - 1458677
Alignment:
Q  251 tgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||| |||||||||| |||||||||||||||| ||| |||||    
T  1458633 tgaatttaaaccaatcaagaagagtgtgttgaaaagtgtttgtta 1458677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 40117822 - 40117862
Alignment:
Q  251 tgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 291  Q
    ||||||||||||||| || |||||||||||||||| |||||    
T  40117822 tgaattttaaccaatgaataagagtgtgttgaaaagtgtgt 40117862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 46555587 - 46555631
Alignment:
Q  250 gtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    ||||||||||| |||||||| |||||||||| |||| ||||||||    
T  46555587 gtgaattttaatcaatcaaagagagtgtgttaaaaagtgtgtgtt 46555631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 166 - 288
Target Start/End: Original strand, 2542711 - 2542835
Alignment:
Q  166 ttttcaacacacttt-tttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaacca 263  Q
    ||||||||||||| | ||||||||| ||||| ||||| ||| || ||||||||||||||  |||||||| ||||||| |||   ||||||||||||||||    
T  2542711 ttttcaacacactctctttgattggttaaaatttacatgaggcccaccaaatttatatggaacccacatgatttggtggaagccatgtgaattttaacca 2542810  T
Q  264 atcaaaaagagtgtgttgaaaaatg 288  Q
    |||||| ||| ||||||| ||||||    
T  2542811 atcaaagagaatgtgttggaaaatg 2542835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 136 - 294
Target Start/End: Complemental strand, 40669091 - 40668931
Alignment:
Q  136 gagaaatgctatcaacacacattcca--atacttttcaacacact-tttttgattggctaaaagttacacgagacctaccaaatttatatgagacccaca 232  Q
    ||||||||||| |||||||||||  |  | ||||||||||||||| | ||||||||| ||||| | ||||| |  | |||||||||||||| | ||||||    
T  40669091 gagaaatgctagcaacacacattttaacacacttttcaacacactctctttgattggttaaaattcacacgggttccaccaaatttatatgggtcccaca 40668992  T
Q  233 taatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    |||||| |||| ||  |||||| ||||||||||||||| ||||||||||  ||||||||||||    
T  40668991 taattttgtgagacccatgtgagttttaaccaatcaaagagagtgtgtt--aaaatgtgtgtt 40668931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 31970166 - 31970119
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31970166 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 31970119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 295
Target Start/End: Complemental strand, 38663781 - 38663650
Alignment:
Q  166 ttttcaacacact-tttttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtga-acatatgtgaattttaacca 263  Q
    ||||||||| ||| ||||| ||||| ||||| | ||| | |||| |||||||||||||  |||||| || ||||||||  || |||||||||| ||||||    
T  38663781 ttttcaacatactctttttaattggttaaaattcacatgggacccaccaaatttatataggacccatatgatttggtgggacctatgtgaattgtaacca 38663682  T
Q  264 atcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||| ||||||||||||||||| |||||||    
T  38663681 atcaaagagagtgtgttgaaaaatatgtgtta 38663650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 295
Target Start/End: Complemental strand, 49403602 - 49403471
Alignment:
Q  166 ttttcaacacacttttttg-attggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtga-acatatgtgaattttaacca 263  Q
    ||||||||||||||||||  ||| | ||||| | ||| |||||| ||||||||||||||  |||||||||||||| ||  || |||||||||||||||||    
T  49403602 ttttcaacacacttttttttatttgttaaaattcacatgagacccaccaaatttatatggaacccacataatttgatgggacttatgtgaattttaacca 49403503  T
Q  264 atcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||| ||| | | |||| ||||||||||||||    
T  49403502 atcataaaaaatatgttaaaaaatgtgtgtta 49403471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 49822621 - 49822670
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgttata 297  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  49822621 atgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgttata 49822670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 295
Target Start/End: Complemental strand, 45563198 - 45563065
Alignment:
Q  164 acttttcaacacacttt-tttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaac 261  Q
    ||||||||||||||||| |||||| || ||||| ||||| |||| | ||||||||||||||||| | |||| ||||||| | |   ||||| ||||||||    
T  45563198 acttttcaacacactttctttgatcggttaaaatttacatgagatccaccaaatttatatgagatcaacatgatttggtgggagccatgtgcattttaac 45563099  T
Q  262 caatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||| | ||||||||  ||||||| |||||    
T  45563098 caatcaaagatagtgtgttagaaaatgtatgtta 45563065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 294
Target Start/End: Complemental strand, 34437729 - 34437598
Alignment:
Q  164 acttttcaacacacttt-tttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtga-acatatgtgaattttaac 261  Q
    ||||||||||||||| | ||||||||| ||||| | ||| | | ||  ||||||| ||||| | ||||||| ||||||||  ||  ||||||||||||||    
T  34437729 acttttcaacacactctctttgattggttaaaattcacatgggtccccccaaatt-atatgggtcccacatgatttggtgggacccatgtgaattttaac 34437631  T
Q  262 caatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    |||||||| ||||| ||||||||||||||||||    
T  34437630 caatcaaagagagtttgttgaaaaatgtgtgtt 34437598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 2542748 - 2542701
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||    
T  2542748 atgtaaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgtta 2542701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 295
Target Start/End: Original strand, 31970129 - 31970260
Alignment:
Q  166 ttttcaacacact-tttttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggt-gaacatatgtgaattttaacca 263  Q
    ||||||||||||| ||||||||||| ||||| | |||    ||| |||||||||||||| ||||||||| ||||||| | ||  || |||| ||||| ||    
T  31970129 ttttcaacacactctttttgattggttaaaattcacattgaacccaccaaatttatatgggacccacatgatttggtgggacccatatgaaatttaatca 31970228  T
Q  264 atcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    || |||||||||||||||||||  ||||||||    
T  31970229 attaaaaagagtgtgttgaaaagcgtgtgtta 31970260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 40374093 - 40374172
Alignment:
Q  212 caaatttatatgagacccacataatttggtgaacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 291  Q
    |||||||||||| ||||||||| ||||||||     |||||||||||||||||||||| |||| || |||||||||||||    
T  40374093 caaatttatatgggacccacatgatttggtggggccatgtgaattttaaccaatcaaatagagcgtattgaaaaatgtgt 40374172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 291
Target Start/End: Complemental strand, 939448 - 939335
Alignment:
Q  181 tttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaaga--gtgt 277  Q
    ||||||||| ||||| ||||| | |||  |||||||||||||| || |||||||||||| ||| |  ||||||||||||||||||||||| |||   |||    
T  939448 tttgattggttaaaatttacatgggacacaccaaatttatatgggatccacataatttgatgagatttatgtgaattttaaccaatcaaagagaatatgt 939349  T
Q  278 gttgaaaaatgtgt 291  Q
    ||||||| ||||||    
T  939348 gttgaaatatgtgt 939335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 295
Target Start/End: Complemental strand, 7444371 - 7444280
Alignment:
Q  205 gacctaccaaatttatatgagacccacataatttggt--gaacatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||||||||||| ||||||||| |||||||  |||| | | |||||||||||| || ||| | | |||||||||||||||||||||    
T  7444371 gacctaccaaatttatatgggacccacatgatttggtgggaac-tctttgaattttaaccgattaaagaaaatgtgttgaaaaatgtgtgtta 7444280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 212 - 287
Target Start/End: Original strand, 45925164 - 45925240
Alignment:
Q  212 caaatttatatgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaat 287  Q
    |||||||||||| ||||||||||||||||||| ||  || |||||||||| |||||||| | | |||||||||||||    
T  45925164 caaatttatatgggacccacataatttggtgagactcatatgaattttaatcaatcaaagaaaatgtgttgaaaaat 45925240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 16661861 - 16661814
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||||||| |||||| ||| |||||||||||||||||||||    
T  16661861 atgtgaattttaaccgatcaaagagaatgtgttgaaaaatgtgtgtta 16661814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 34437690 - 34437737
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||||||||||||| ||||||||||||||| || ||||||    
T  34437690 atgtgaattttaaccaatcaaagagagtgtgttgaaaagtgcgtgtta 34437737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 294
Target Start/End: Original strand, 731339 - 731468
Alignment:
Q  166 ttttcaacacactt-ttttgattggctaaaagttacacgagacctaccaaatttatatgagacccacataatttggtg-aacatatgtgaattttaacca 263  Q
    ||||||||||| || |||||||||  ||||| | ||| ||||   |||||||||||||| ||||||||| ||||||||  ||  |||| |||||||||||    
T  731339 ttttcaacacatttattttgattgattaaaattcacatgagattcaccaaatttatatgggacccacatgatttggtgcgactcatgtaaattttaacca 731438  T
Q  264 atcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    || ||||||| | ||||| ||||||||||||    
T  731439 ataaaaaagactttgttg-aaaatgtgtgtt 731468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 38663744 - 38663790
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 294  Q
    |||||||||||||||||| ||||||||| |||||||||||| |||||    
T  38663744 atgtgaattttaaccaattaaaaagagtatgttgaaaaatgcgtgtt 38663790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 40669023 - 40669065
Alignment:
Q  249 tgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 291  Q
    ||||||||||||||||||||| ||||||||||||||| |||||    
T  40669023 tgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgt 40669065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 31851952 - 31851993
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgt 289  Q
    |||||||||||||| ||||||| |||||||||||||||||||    
T  31851952 atgtgaattttaacaaatcaaagagagtgtgttgaaaaatgt 31851993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 15366542 - 15366504
Alignment:
Q  253 aattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 291  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  15366542 aattttaaccaatcaaaaagagtgtgttggaaagtgtgt 15366504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 4713334 - 4713269
Alignment:
Q  211 ccaaatttatatgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaagagt 275  Q
    ||||||| ||| |||| |||||| ||||| | | || |||||||||||||||||||||||||||||    
T  4713334 ccaaattcatacgagatccacatgatttgataagacttatgtgaattttaaccaatcaaaaagagt 4713269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 21281525 - 21281476
Alignment:
Q  247 tatgtgaattttaaccaatca-aaaagagtgtgttgaaaaatgtgtgtta 295  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||| |||||    
T  21281525 tatgtgaattttaaccaatcaaaaaagaatgtgttgaaaagtgtatgtta 21281476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 23317991 - 23317923
Alignment:
Q  213 aaatttatatgagacccacataatttggt-gaacatatgtgaattttaaccaatcaaaaagagtgtgtt 280  Q
    ||||||||||| ||||||||| ||||||| | || ||||||||||||||| ||| |||  |||||||||    
T  23317991 aaatttatatgggacccacatgatttggtgggacctatgtgaattttaacaaattaaagggagtgtgtt 23317923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 295
Target Start/End: Original strand, 136377 - 136461
Alignment:
Q  212 caaatttatatgagacccacataatttggtga-acatatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||| | | ||||| ||||| ||  ||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  136377 caaatttatatgggtcacacatgatttgatgggacacatgtgagttttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 136461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 8273 - 8320
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||| ||||||||||||| || |||||||| |||||||||    
T  8273 atgtgaattttagccaatcaaaaagaatgcgttgaaaagtgtgtgtta 8320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 201004 - 200957
Alignment:
Q  248 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 295  Q
    |||||||||||||||||| || |||| ||||||||||||| |||||||    
T  201004 atgtgaattttaaccaattaagaagaatgtgttgaaaaatatgtgtta 200957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University