View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_67 (Length: 362)
Name: NF1511_high_67
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_67 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 86773 - 86426
Alignment:
| Q |
18 |
atataagagtgttggaatgagaaattatttgaaaaagtgaacgtaaaaaacatagtgttata--gttggtgttgctatcacttttctaatgaatttatta |
115 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
86773 |
atataagagtgt-ggaatgagaaattatttgaaaaagtgaacgtaaaaaacatagtgttatatagttggtgttgctatcacttttctaatgaatttatta |
86675 |
T |
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| Q |
116 |
cctaaaaaccatacatgatcataacaaaactaaaaacccccaacaataattcct---------caccaacgtgatttcacaggtttaagcccacaattac |
206 |
Q |
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| T |
86674 |
cctaaaaaccatacatgatcataacaaaactaaaaacccccaacaataattcctataattcctcaccaacgtgatttcacaggtttaagcccacaattac |
86575 |
T |
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| Q |
207 |
aatggtcccaaaatttgatgcaaaaccaattctaatttgagaagcttatttgttttctttattatctaccgaccaaacttggttttgttctcaatttgga |
306 |
Q |
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| T |
86574 |
aatggtctcaaaatttgatgcaaaaccaattctaatttgagaagcttatttgttttctttattatctaccgaccaaacttggttttgttctcaatttgga |
86475 |
T |
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| Q |
307 |
taccacaaaaatagaaagtagaaggttttgtaattttattttcaaaact |
355 |
Q |
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| T |
86474 |
taccacaaaaatagaaagtagaaggttttgtaattttattttcaaaact |
86426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 40879510 - 40879857
Alignment:
| Q |
18 |
atataagagtgttggaatgagaaattatttgaaaaagtgaacgtaaaaaacatagtgttata--gttggtgttgctatcacttttctaatgaatttatta |
115 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40879510 |
atataagagtgt-ggaatgagaaattatttgaaaaagtgaacgtaaaaaacatagtgttatatagttggtgttgctatcacttttctaatgaatttatta |
40879608 |
T |
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| Q |
116 |
cctaaaaaccatacatgatcataacaaaactaaaaacccccaacaataa---------ttcctcaccaacgtgatttcacaggtttaagcccacaattac |
206 |
Q |
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| T |
40879609 |
cctaaaaaccatacatgatcataacaaaactaaaaacccccaacaataattcctataattcctcaccaacgtgatttcacaggtttaagcccacaattac |
40879708 |
T |
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| Q |
207 |
aatggtcccaaaatttgatgcaaaaccaattctaatttgagaagcttatttgttttctttattatctaccgaccaaacttggttttgttctcaatttgga |
306 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40879709 |
aatggtctcaaaatttgatgcaaaaccaattctaatttgagaagcttatttgttttctttattatctaccgaccaaacttggttttgttctcaatttgga |
40879808 |
T |
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| Q |
307 |
taccacaaaaatagaaagtagaaggttttgtaattttattttcaaaact |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40879809 |
taccacaaaaatagaaagtagaaggttttgtaattttattttcaaaact |
40879857 |
T |
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