View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_7 (Length: 694)
Name: NF1511_high_7
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 629; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 18 - 678
Target Start/End: Complemental strand, 41640727 - 41640068
Alignment:
| Q |
18 |
aatattgtgcttccaaagaccccagttgtttgtaaaccctttcaagatgcatttgaaaaggtttttaagatggcagacattgaccctcaaagaacagtaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41640727 |
aatattgtgcttccaaagaccccagttgtttgtaaaccctttcaagatgcatttgaaaaggtttttaagatggcagacattgaccctcaaagaacagtaa |
41640628 |
T |
|
| Q |
118 |
gatttttgttatgagcatatttttgattatgtgctatctagtcagatcatcaaattattttatttatttactttgctttttgcagttgttctttgatgac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
41640627 |
gatttttgttatgagcatatttttgattatgtgctatctagtcagatcatcaaattatgt-atttatttactttgctttttgcagttgttctttgatgac |
41640529 |
T |
|
| Q |
218 |
agtatccgcaatatacagacaggcaaatccttgggccttcacacagtcttggttagtagttcatagtattttattttcgagttagtagtcattttgaccc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41640528 |
agtatccgcaatatacagacaggcaaatccttgggccttcacacagtcttggttagtagttcatagtattttattttcgagttagtagtcattttgaccc |
41640429 |
T |
|
| Q |
318 |
ttaaatgtgtgagaagctgtcaccatagtctgaatttatcaaaattgtaaaaacatacttaaacacgtcttgtgttatcgaatgtgttttcgctagtaag |
417 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
41640428 |
ttaaatgtgtgagaagctgtcgccatagtctgaatttatcaaaattgtaaaaacatactcaaacacgtcttgtgttatcgaacgtgttttcgctagtaag |
41640329 |
T |
|
| Q |
418 |
tttgatcttcaaatgtgagtttcatgaatcaatttggccaaaaaattattagcaaaaacatacttgaaaatgttattgtaattttgatataatcagagat |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41640328 |
tttgatcttcaaatgtgagtttcatgaatcaatttggccaaaaaattattagcaaaaacatacttgaaaatgttattgtaattttcatataatcagagat |
41640229 |
T |
|
| Q |
518 |
acattagtgacagactgacaatgcctcacacaattaagaaacaaatgaatatttgctcaattttttcttttcaattttatgtggacataatcatccattt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41640228 |
acattagtgacagactgacaatgcctcacacaattaagaaacaaatgaatatttgctcaattttttcttttcaattttatgtggacataatcatccattt |
41640129 |
T |
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| Q |
618 |
acaattcaaagtttttatggttgcctttgatttggttaagttgaatgaaaattcttgccta |
678 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41640128 |
acaattcaaagtttttatggttgcctttgatttggttaagttgaatgaaacttcttgccta |
41640068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 8e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 24019207 - 24019302
Alignment:
| Q |
24 |
gtgcttccaaagaccccagttgtttgtaaaccctttcaagatgcatttgaaaaggtttttaagatggcagacattgaccctcaaagaacagtaaga |
119 |
Q |
| |
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|||||||||||||| |||||||| || ||||| ||| |||||||||||||||||| || ||| |||| ||||||||||||||||||||||||||| |
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| T |
24019207 |
gtgcttccaaagacaccagttgtctgcaaaccttttgaagatgcatttgaaaaggcattcaagttggctgacattgaccctcaaagaacagtaaga |
24019302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 24019592 - 24019642
Alignment:
| Q |
189 |
tttgctttttgcagttgttctttgatgacagtatccgcaatatacagacag |
239 |
Q |
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|||||| ||| ||||||||||| |||||||||||||||||| ||||||||| |
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| T |
24019592 |
tttgctcttttcagttgttcttcgatgacagtatccgcaatttacagacag |
24019642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 23969361 - 23969303
Alignment:
| Q |
61 |
aagatgcatttgaaaaggtttttaagatggcagacattgaccctcaaagaacagtaaga |
119 |
Q |
| |
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||||||||||||| |||| ||| || ||||||| |||||||||||||||||| ||||| |
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| T |
23969361 |
aagatgcatttgataaggctttcaaattggcagatattgaccctcaaagaacaataaga |
23969303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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