View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1511_high_73 (Length: 351)
Name: NF1511_high_73
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_73 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 337
Target Start/End: Complemental strand, 35980908 - 35980581
Alignment:
| Q |
11 |
cataggatgtacttggaatatcctttggcttaatatgtgctagttgctgcatgcatgtctgtgtttttatttatca-tcacatcaccaacaaatactata |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35980908 |
cataggatgtacttggaatatcctttggcttaatatgtgctagttgctgcatgcatgtctgtgtttttatttatcaatcacatcaccaacaaatactata |
35980809 |
T |
|
| Q |
110 |
aatacacataagaacaccatgaaattgttcatcatcaaccatacaataaagcttgttaaggagtatagtactcatgtgtaagtgcattactgggcaatga |
209 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35980808 |
aatacacataagaacaccgtgaaattgttcatcatcaaccaatcaataaagcttgttaaggagtatagtactcatgtgtaagtgcattactgggcaatga |
35980709 |
T |
|
| Q |
210 |
cttttttggcagtagttcacttgatcattcagatgatgcaaacaaactcactgccaaagaagatttgccccgcaattcactcttgtgcacattcatatac |
309 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35980708 |
cttttttggcagtagttcacttgatctttcagatgatgcaaacaaactcactgccaaagaagatttgccccgcaattcactcttgtgcacattcatatac |
35980609 |
T |
|
| Q |
310 |
tttatcaagaagaaattaaggtatatat |
337 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
35980608 |
tttatcaagaagaaattaaggtatatat |
35980581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 35991666 - 35991381
Alignment:
| Q |
13 |
taggatgtacttggaatatcctttggcttaatatgtgctagttgctgcatgcatgtctgtgt----ttttatttatcatcacatcaccaacaaatactat |
108 |
Q |
| |
|
|||||||| |||||||||||| |||||||| |||| || || ||||||||||||||||| ||||| |||| ||||||||||||| ||||| ||| |
|
|
| T |
35991666 |
taggatgtgcttggaatatcccttggcttattatgca-tatgtg-tgcatgcatgtctgtgtaagtttttagttataatcacatcaccaaaaaatattat |
35991569 |
T |
|
| Q |
109 |
aaatacacataagaacaccatgaaattgttcatcatcaaccatacaa----taaagcttgttaaggagtatag-tactcatgtgtaagtgcattactggg |
203 |
Q |
| |
|
| ||||||||| | ||||| |||||||||||||||||| || ||| | |||||||||||||| | | |||||||||||| ||||||||||||| |
|
|
| T |
35991568 |
atatacacatatggacacccagaaattgttcatcatcaatcaatcaactaatcaagcttgttaaggatttgtgatactcatgtgtaggtgcattactggg |
35991469 |
T |
|
| Q |
204 |
caatgacttttttggcagtagttcacttgatcattcagatgatgcaaacaaactcactgccaaagaagatttgccccgcaattcactc |
291 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35991468 |
caatgacttctttggcagtagttgacttgatcattcagatgatgcaaacaaactcaccgccaaagaagatttgccccgcaattcactc |
35991381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 4985015 - 4985047
Alignment:
| Q |
261 |
tgccaaagaagatttgccccgcaattcactctt |
293 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
4985015 |
tgccaaagaagattttccccgcaattcactctt |
4985047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University