View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_high_74 (Length: 350)

Name: NF1511_high_74
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_high_74
NF1511_high_74
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-333)||(4550-4872)


Alignment Details
Target: scaffold0110 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 4872 - 4550
Alignment:
Q  1 gtgacaaaaatgcaattaattaatctattatattggttgaggtagaaaattagaataatgtcttgaaatgcaacaaagaacatttgtgacacctttcact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||    
T  4872 gtgacaaaaatgcaattaattaatctattatattggttgaggtagaaaattagaataatg----------caacaaagaacatttgtgacacctttcact 4783  T
Q  101 aagaaaaagaacatccaaatttgctaggtttatgtagttttcatattatactaagaatactttattgtcataaacataacaaataaatcttgctttcctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||  |||||||||||||||||||||||||||||||||||||||||    
T  4782 aagaaaaagaacatccaaatttgctaggtttatgtagttttcatattttactaataaccctttattgtcataaacataacaaataaatcttgctttcctt 4683  T
Q  201 gatattattttgcaaccaaagttatcaaaagagagttagcaaaagtgacaattgaatacacttaactctcaactgtcttctccattccatatctaaacta 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4682 gatattattttgcaaccaaagttatcaaaagagagttagcaaaagtgacaattgaatacacttaactctcaactgtcttctccactccatatctaaacta 4583  T
Q  301 cagttattctgttgtagcaagatagtgacattg 333  Q
    |||||||||||||||| ||||||||||||||||    
T  4582 cagttattctgttgtaccaagatagtgacattg 4550  T

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