View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_78 (Length: 343)
Name: NF1511_high_78
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_78 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 39996465 - 39996801
Alignment:
| Q |
1 |
attcctctctattatataaaagtatttgggggtgtcaaaataggacaagtacaacaaatcaacccccaattagtcttgtatataaaatttggattgttga |
100 |
Q |
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| T |
39996465 |
attcctctctataacataaaagtctttgggggtgtcaaaataggacaagtacaacaaatcaacccccaattagtcttgtatataaaatttggattgttga |
39996564 |
T |
|
| Q |
101 |
caaaatttaaggattaaatcgcttggacccaacccacccaacctaaaatttattagctatgacttagccaacaatcaatggacttggccaactacgaaag |
200 |
Q |
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| T |
39996565 |
caaaatttaaggattaaatcgcttgaacccaacccacccaacctaaaatttgttagcaatgacttagccaacaatcaatggatttggccaactacgaaag |
39996664 |
T |
|
| Q |
201 |
tagaaaatagcttaattttcagattaataagagtaaaatataatctatcatatcatattcatattgttctaaggctagaactctagggatttttgtcagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39996665 |
tagaaaatagcttaattttcagattaataagagtaaaaaataatctatcatatcatattcatattgttctaaggctagaactctagggatttttgtcagt |
39996764 |
T |
|
| Q |
301 |
aatgtaccgtgttcaaggtcaaagtgtttcatctctc |
337 |
Q |
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|||||||||||| ||||||||||||||||||| |||| |
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| T |
39996765 |
aatgtaccgtgtccaaggtcaaagtgtttcatatctc |
39996801 |
T |
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