View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_82 (Length: 338)
Name: NF1511_high_82
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_82 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 42899225 - 42899433
Alignment:
| Q |
1 |
tgttcatgtttcaagaattatttatcagtaatctttacctttcaccttggaatactttagctatttgagacaagggaatgggttgttcacactttagcta |
100 |
Q |
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| T |
42899225 |
tgttcctgtttcaagtattatttatcaatcatctttacctttcaccttcgaatactttagctatttgagacaagggaatgggttgttcacactttagcta |
42899324 |
T |
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| Q |
101 |
gaaaaccagagatccatccatccacgaaaacaaaatagaaacactgatcacaactgggcggaaaacgcagacggacttgctcatcgggcgcggttaacag |
200 |
Q |
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| T |
42899325 |
gaaaaccagagatccatccatccacgaaaacaacatagaaacactgatcacaactgggcggaaaacgcagacggacttgctcatcgggcgcggttaacag |
42899424 |
T |
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| Q |
201 |
tgagttcaa |
209 |
Q |
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| T |
42899425 |
tgagttcaa |
42899433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 42899474 - 42899551
Alignment:
| Q |
250 |
tgtatctcgcacgaggatacaattccatcgcgatttgtgacgcaccagagcagagctccactacgcacttcatctcac |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42899474 |
tgtatctcgcacgaggatacaattccatcgcgatttgtgacgcaccagagcagagctccactacgcacttcatttcac |
42899551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 19386543 - 19386499
Alignment:
| Q |
142 |
cactgatcacaactgggcggaaaacgcagacggacttgctcatcg |
186 |
Q |
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| T |
19386543 |
cactgatctcaactgcccggaaaacgcagacgaacttgctcatcg |
19386499 |
T |
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