View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_85 (Length: 327)
Name: NF1511_high_85
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_85 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 33949330 - 33949029
Alignment:
| Q |
18 |
ataccaaagcatcaacatatgaaagaaccttttttatatatgtttgtgtgtgaagggtacgattatgatattatgttcatacaaatttcagactcaacaa |
117 |
Q |
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| T |
33949330 |
ataccaaagcatcaacatatgaaagaaccttttttatatatgtttgtgtgtgaagggtacgattatgatattatgttcatacaaatttcagactcaacaa |
33949231 |
T |
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| Q |
118 |
catgaaaatgagaaaagaacatgtttggcaacagcatagagccctctnnnnnnnnnnnnnnnnnnnncaagatatggattatgaatgattaggaacgtga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33949230 |
catgaaaatgagaaaagaacatgtttggcaacagcatagagccctctaaaaaaataatgaaaaaaaacaagatatggattatgaatgattaggaacgtga |
33949131 |
T |
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| Q |
218 |
gaaagaccctattcccctagaaatctgatccatacgattatcagaccccaagcaacctaacaaacctctcttataaggcaagaatgttctcttcttcatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33949130 |
gaaagaccctattcccctagaaatctgatccatacgattatcagaccccaagcaacctaacaaacctctcttataaggcaagaatgttctcttcttcatc |
33949031 |
T |
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| Q |
318 |
tc |
319 |
Q |
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|| |
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| T |
33949030 |
tc |
33949029 |
T |
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