View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1511_high_91 (Length: 319)
Name: NF1511_high_91
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_91 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 52779163 - 52778854
Alignment:
| Q |
1 |
aatgtatgacaatgtctttgcatgtaattatttcatgtcgaaagaatctataaaagaaaattgtgttcgtaaaaaataaagactaaacctacatgttaat |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52779163 |
aatgtctgacaatgtctttgcatgtaattatttcatgtcgaaagaatctataaaagaaaattgtgttcgtaaaaaataaagactaaacctacatgttaat |
52779064 |
T |
|
| Q |
101 |
tatgcaacttgaattttagtcnnnnnnn-ttaggcaacttgagttttagggtttaattgggagtttagaggaaagtagaatagggagcactttgtaggag |
199 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52779063 |
tatgcaacttgaattttagtcaaaaaaaattaggcaacttgagttttagggtttaattgggagtttagacgaaagtagaatagggagcactttgtaggag |
52778964 |
T |
|
| Q |
200 |
ggggaggaaggaaacgaaaagagaactcctcaattcttttttagtgttttcgaatgtaatgaaaatacttattaataatattaaacttttatcttttcta |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
52778963 |
ggggaggaaggaaacgaaaagagaactcctcaattcttttttagtgttttcgaatgtaatgaaaatacttattaataatattaaactattatcttttcta |
52778864 |
T |
|
| Q |
300 |
caatattcat |
309 |
Q |
| |
|
|||||||||| |
|
|
| T |
52778863 |
caatattcat |
52778854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University