View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1511_high_98 (Length: 306)
Name: NF1511_high_98
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_98 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] scaffold0053 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 10821504 - 10821214
Alignment:
| Q |
16 |
gatatactaatatgtgttcaagtgtgcgggatcttataatatatctatcaataaattgaacgtgtatgatagcatcagaagcactagataagctttaaag |
115 |
Q |
| |
|
|||||| |||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||||| | |||||||||| ||||||| ||||||||||| |
|
|
| T |
10821504 |
gatatattaatatgtgttcaagtgtgcagaatcatataatatatctatcaataaattgaatgtgtataagagcatcagaaacactagagaagctttaaag |
10821405 |
T |
|
| Q |
116 |
attatggtaaaagacttgaagaaaagttaactataagtcaacatattggatcagaagaaatgatgtctctcaaaagttgaagattgacctaatcaaactc |
215 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10821404 |
attatggtagaagacttgaagaaaagttaactataagtcaacatattggatcagaagaaatgatgtctctcaaaagttgaagattgacctaatcaaactc |
10821305 |
T |
|
| Q |
216 |
tgtgaagatcatcagactcacaagagctcatcaaacttgaaacccttctatctctatcaaggatctgagtacaattttgtcttcttctgac |
306 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10821304 |
tgtgaagatcatcagactcagaagagctcatcaaacttgaaacccttctgtctctatcaaggatctgagtacaattttatcttcttctgac |
10821214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 22311251 - 22311411
Alignment:
| Q |
15 |
ggatatactaatatgtgttcaagtgtgcgggatcttataatatatctatcaataaattgaacgtgtatgatagcatcagaagcactagataagctttaaa |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||| ||||||||||| ||||| ||||||| | ||| | ||||||||||||| ||| ||||| | | |
|
|
| T |
22311251 |
ggatatactaatatttgttcaagtgtgcaggatcatataatatatccatcaaagtattgaacatctattagagcatcagaagcataagagaagctcaata |
22311350 |
T |
|
| Q |
115 |
gattatggtaaaagacttgaagaaaagttaactataagtcaacatattggatcagaagaaa |
175 |
Q |
| |
|
|| ||||||| |||| | |||||| || ||| | |||||||||||||||||||||||||| |
|
|
| T |
22311351 |
gactatggtagaagatctaaagaaaggtcaaccagaagtcaacatattggatcagaagaaa |
22311411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 229
Target Start/End: Complemental strand, 21578486 - 21578290
Alignment:
| Q |
35 |
aagtgtgcgggatcttataatatatctatcaataaattgaacgtgtatgatagcatcagaagcactag-ataagctttaaagattatggtaaaagacttg |
133 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| | ||| ||| ||||| | ||||||| |||||||| | |||||| ||||||||||||| |||| || |
|
|
| T |
21578486 |
aagtgtgcaggatcatataatatatccatcaagagattaaacatgtattaaagcatcaaaagcactaacagaagcttaaaagattatggtagaagatctg |
21578387 |
T |
|
| Q |
134 |
aagaaaagttaactataagtcaacatattggatcagaag-aaatgatgtctctcaaaagttgaagattgacctaatcaaactctgtgaagatcatca |
229 |
Q |
| |
|
||||| || ||| | |||||||||||||| || ||||| ||| || | |||||| ||||||||||||||| | |||| ||| |||| ||||||||| |
|
|
| T |
21578386 |
gagaaaggtcaaccagaagtcaacatattgaattagaagaaaaagacgcctctcagaagttgaagattgacatcatcagactatgtggagatcatca |
21578290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 21547939 - 21548154
Alignment:
| Q |
15 |
ggatatactaatatgtgttcaagtgtgcgggatcttataatatatctatcaataaattgaacgtgtatgatagcatcagaagcactagataagctttaaa |
114 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||| || |||||||| ||||| | ||||||| ||||| | ||||||||||| || ||| ||||| ||| |
|
|
| T |
21547939 |
ggatatactaatattttttcaagtgtgaaggatcatagaatatatccatcaagagattgaacatgtattaaagcatcagaagtacaagagaagctcaaaa |
21548038 |
T |
|
| Q |
115 |
gattatggtaaaagacttgaagaaaagttaactataagtcaacatattggatcagaagaaat-gatgtctctcaaaagttgaagattgacctaatcaaac |
213 |
Q |
| |
|
|| | ||||| |||| |||||||| || ||| || ||||| || ||||| |||||||||| || | |||||| ||| | |||||| | | ||||||| |
|
|
| T |
21548039 |
gactgtggtagaagatctgaagaaaggtcaaccatgggtcaaaatcttggaacagaagaaatggacgcctctcagaagctaaagattagcatcatcaaac |
21548138 |
T |
|
| Q |
214 |
tctgtgaagatcatca |
229 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
21548139 |
tctatgaagatcatca |
21548154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 21748221 - 21748389
Alignment:
| Q |
73 |
gaacgtgtatgatagcatcagaagcactagataagctttaaagattatggtaaaagacttgaagaaaagttaactataagtcaacatattggatcagaag |
172 |
Q |
| |
|
|||| ||||| | ||||| |||| ||| ||| |||||| ||||| ||||||| |||| |||||||| || ||| | |||||||||| |||||||||||| |
|
|
| T |
21748221 |
gaacatgtattagagcattagaaacacaagagaagcttaaaagactatggtagaagatctgaagaaaggtcaaccacaagtcaacatcttggatcagaag |
21748320 |
T |
|
| Q |
173 |
-aaatgatgtctctcaaaagttgaagattgacctaatcaaactctgtgaagatcatcagactcacaaga |
240 |
Q |
| |
|
||| || | | |||| |||||||||||| |||| |||| ||| ||| |||||||||| ||||| |||| |
|
|
| T |
21748321 |
aaaaggacgccactcagaagttgaagattaacctcatcagactttgtaaagatcatcacactcagaaga |
21748389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 29409951 - 29409860
Alignment:
| Q |
150 |
aagtcaacatattggatcagaagaaatg-atgtctctcaaaagttgaagattgacctaatcaaactctgtgaagatcatcagactcacaaga |
240 |
Q |
| |
|
|||||||||| ||||||||||||||| | | | ||||||||||||||||||| |||| ||| ||||| |||||||||||||||||| |||| |
|
|
| T |
29409951 |
aagtcaacatcttggatcagaagaaaaggacgcctctcaaaagttgaagattaacctcgtcagactctatgaagatcatcagactcagaaga |
29409860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 19565098 - 19564930
Alignment:
| Q |
19 |
atactaatatgtgttcaagtgtgcgggatcttataatatatctatcaataaattgaacgtgtatgatagcatcagaagcactagataagctttaaagatt |
118 |
Q |
| |
|
|||||||||| |||| |||||||| ||||| || ||||||| ||||| | || ||| ||||| | |||||||||||||| ||| ||||| ||||| | |
|
|
| T |
19565098 |
atactaatatttgttaaagtgtgcaggatcatagaatatattcatcaagta-ttaaacatgtattaaagcatcagaagcacaagagaagctc-aaagact |
19565001 |
T |
|
| Q |
119 |
atggtaaaagacttgaagaaaagttaactataagtcaacatattggatcagaag-aaatgatgtctctcaa |
188 |
Q |
| |
|
|||||| ||||| |||||||| | ||| | |||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
19565000 |
atggtagaagacctgaagaaagttcaaccagcagtcaacatattggatcagaagaaaaggatgtctctcaa |
19564930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 17417135 - 17417287
Alignment:
| Q |
21 |
actaatatgtgttcaagtgtgcgggatcttataatatatctatcaataaattgaacgtgtatgatagcatcagaagcactagataagctttaaagattat |
120 |
Q |
| |
|
|||||||| |||||||||||| ||||| || |||||||||||||| | |||||| |||||| |||||||||||||| ||| ||||| ||||| | |
|
|
| T |
17417135 |
actaatatttgttcaagtgtgtaggatcataaaatatatctatcaagta-ttgaacaagtatgaaagcatcagaagcacaagaaaagctc-aaagacatt |
17417232 |
T |
|
| Q |
121 |
ggtaaaagacttgaagaaaagttaactataagtcaacatattggatcagaagaaa |
175 |
Q |
| |
|
|||| |||| |||||||| || || | ||||||||| ||| |||||||||||| |
|
|
| T |
17417233 |
ggtagaagatctgaagaaatgtcaatcagaagtcaacacattagatcagaagaaa |
17417287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 24764171 - 24764331
Alignment:
| Q |
15 |
ggatatactaatatgtgttcaagtgtgcgggatcttataatatatctatcaataaattgaacgtgtatgatagcatcagaagcactagataagctttaaa |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| || ||||||| | ||| ||||||| ||||| | ||||||| |||||| || ||||| ||| |
|
|
| T |
24764171 |
ggatatactaatatttgttcaagtgtgcaagatcgtaggatatatccaccaaagtattgaacatgtattaaagcatcataagcacacgagaagctcaaaa |
24764270 |
T |
|
| Q |
115 |
gattatggtaaaagacttgaagaaaagttaactataagtcaacatattggatcagaagaaa |
175 |
Q |
| |
|
|| |||||||||| | | || ||| | ||| | ||||||||| |||||||||||||||| |
|
|
| T |
24764271 |
gaatatggtaaaatatctaaaaaaagatcaaccagaagtcaacacattggatcagaagaaa |
24764331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 35665959 - 35666005
Alignment:
| Q |
132 |
tgaagaaaagttaactataagtcaacatattggatcagaagaaatga |
178 |
Q |
| |
|
||||||||||| ||| | |||||||||| |||||||||||||||||| |
|
|
| T |
35665959 |
tgaagaaaagtcaaccagaagtcaacattttggatcagaagaaatga |
35666005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 15787454 - 15787674
Alignment:
| Q |
15 |
ggatatactaatatgtgttcaagtgtgcgggatcttataatatatctatcaataaattgaacgtgtatgatagcatcagaagcactagataagctttaaa |
114 |
Q |
| |
|
||||||| |||||| ||||||| ||||| ||||| || || ||||| ||||| | ||||||| | ||| | ||| || ||||||| ||| |||||| ||| |
|
|
| T |
15787454 |
ggatatattaatatttgttcaaatgtgcaggatcatagaacatatccatcaagagattgaacatatattaaagcgtcggaagcacaagagaagcttaaaa |
15787553 |
T |
|
| Q |
115 |
gattatggtaaaagacttgaagaaaagttaactataagtcaacatattggatcagaagaaa-tgatgtctctcaaaagttgaagattgacctaatcaaac |
213 |
Q |
| |
|
|| ||||||| |||| |||||||| || ||| |||||||||| |||||| |||||||| ||| |||||||| ||| |||||| |||| || | || |
|
|
| T |
15787554 |
gaatatggtagaagatctgaagaaaggtcaaccgaaagtcaacatcttggattagaagaaaatgacgtctctcagaagccgaagatcaacctcattagac |
15787653 |
T |
|
| Q |
214 |
tctgtgaagatcatcagactc |
234 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
15787654 |
tcgatgaagatcatcagactc |
15787674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 15650787 - 15651015
Alignment:
| Q |
22 |
ctaatatgtgttcaagtgtgcgggatcttataatatatctatcaataaattgaacgtgtatgatagcatcagaagcactagataagctttaaagattatg |
121 |
Q |
| |
|
||||||| |||||| ||||| ||||| |||||||||| |||| ||||||| ||||| | | ||||||||||| ||| |||||| ||||| | || |
|
|
| T |
15650787 |
ctaatatttgttcaggtgtgtaggatcatataatatat---tcaaagtattgaacatgtataacaatatcagaagcacaagagaagcttaaaagactgtg |
15650883 |
T |
|
| Q |
122 |
gtaaaagacttgaagaaaagttaactataagtcaacatattggatcagaagaaa-tgatgtctctcaaaagttgaagattgacctaatcaaactctgtga |
220 |
Q |
| |
|
||| |||| |||||| | || ||| | |||||||||| |||||||| |||||| ||| | |||||| ||| |||||||| || | |||| ||||||||| |
|
|
| T |
15650884 |
gtagaagatatgaagacaggtcaaccagaagtcaacatcttggatcaaaagaaaatgacgcctctcagaagctgaagattaacatcatcagactctgtga |
15650983 |
T |
|
| Q |
221 |
agatcatcagactcacaagagctcatcaaact |
252 |
Q |
| |
|
||||||||| ||| |||| ||||||||||| |
|
|
| T |
15650984 |
agatcatcatacttggaagacctcatcaaact |
15651015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 12668744 - 12668975
Alignment:
| Q |
17 |
atatactaatatgtgttcaagtgtgcgggatcttataatatatctatcaataaattgaacgtgtatgatagcat-cagaagcactagataagctttaaag |
115 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||| || |||||||| ||||| ||||||| ||||| ||||||| | ||||| ||| ||| || |||| |
|
|
| T |
12668744 |
atatgctaatatttgttcaagtgtgtaggatcataaaatatatccatcaaagtattgaacatgtattatagcataaaaaagcataagagaagattaaaag |
12668843 |
T |
|
| Q |
116 |
attatggtaaaagacttgaagaaaagttaactataagtcaacatattggatcagaag-aaatgatgtctctcaaaagttgaagattgacctaatcaaact |
214 |
Q |
| |
|
| ||||||| |||| ||||||| || ||| | ||||||| || |||||||||||| ||| || | |||||| ||| ||||| || |||| |||| ||| |
|
|
| T |
12668844 |
actatggtacaagatccgaagaaaggtcaaccaaaagtcaatatcttggatcagaagaaaaggacgcctctcagaagctgaaggttaacctcatcatact |
12668943 |
T |
|
| Q |
215 |
ctgtgaagatcatcagactcacaagagctcat |
246 |
Q |
| |
|
||||||||| ||||||||| | |||| ||||| |
|
|
| T |
12668944 |
ctgtgaagaccatcagacttagaagacctcat |
12668975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 22049650 - 22049519
Alignment:
| Q |
98 |
actagataagctttaaagattatggtaaaagacttgaagaaaagttaactataagtcaacatattggatcagaagaaatgatgtctctcaaaagttgaag |
197 |
Q |
| |
|
|||||| |||||||||||| ||||||| |||| |||||||| || ||| ||| |||||||| |||||| | |||||| |||| |||| || ||||| |
|
|
| T |
22049650 |
actagagaagctttaaagactatggtagaagatctgaagaaaggtcaaccatatgtcaacatcttggattaaaagaaaggatgctactcagaaaatgaag |
22049551 |
T |
|
| Q |
198 |
attgacctaatcaaactctgtgaagatcatcaga |
231 |
Q |
| |
|
||| |||| |||| |||| |||||||||||||| |
|
|
| T |
22049550 |
attaacctcatcagactc--tgaagatcatcaga |
22049519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 175
Target Start/End: Complemental strand, 22666682 - 22666541
Alignment:
| Q |
32 |
ttcaagtgtgcgggatcttataatatatctatcaataaattgaacgtgtatgatagcatcagaagcactagataagctttaaagattatggtaaaagact |
131 |
Q |
| |
|
||||||||||| |||| || |||| |||||||| | |||||| ||||| | ||||| |||||||||||| || || || || |||| || |||| | |
|
|
| T |
22666682 |
ttcaagtgtgcaagatcatagaataaatctatcagtggcttgaacatgtataagagcattagaagcactagagaaactagaa-gactatgatagaagatt |
22666584 |
T |
|
| Q |
132 |
tgaagaaaagttaactataagtcaacatattggatcagaagaaa |
175 |
Q |
| |
|
|||| |||||| ||||| |||||||||| ||||||||||||||| |
|
|
| T |
22666583 |
tgaa-aaaagtcaactagaagtcaacatcttggatcagaagaaa |
22666541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 19018909 - 19019002
Alignment:
| Q |
132 |
tgaagaaaagttaactataagtcaacatattggatcagaagaaatgatgtctctcaaaagttgaagattgacctaatcaaactctgtgaagatca |
226 |
Q |
| |
|
||||||||||| ||| | |||||||||| |||||||||| ||| || | |||||| ||| |||||||| |||| |||| ||| ||||||||||| |
|
|
| T |
19018909 |
tgaagaaaagtcaac-agaagtcaacatcttggatcagagaaaaggacgcctctcagaagctgaagattaacctcatcagactttgtgaagatca |
19019002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 12669073 - 12669113
Alignment:
| Q |
266 |
tctctatcaaggatctgagtacaattttgtcttcttctgac |
306 |
Q |
| |
|
||||| |||||||||||| || ||||||||||||||||||| |
|
|
| T |
12669073 |
tctctgtcaaggatctgaatataattttgtcttcttctgac |
12669113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 19019107 - 19019147
Alignment:
| Q |
266 |
tctctatcaaggatctgagtacaattttgtcttcttctgac |
306 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||| ||||| |
|
|
| T |
19019107 |
tctctatcaaggatatgagcacaattttgtcttctcctgac |
19019147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 22975717 - 22975558
Alignment:
| Q |
16 |
gatatactaatatgtgttcaagtgtgcgggatcttataatatatctatcaataaattgaacgtgtatgatagcatcagaagcactagataagctttaaag |
115 |
Q |
| |
|
||||||||||||| ||||||||||||| | ||| || ||||||| ||||| | |||||| ||||| | | |||||||||||| | | ||||| |||| |
|
|
| T |
22975717 |
gatatactaatatttgttcaagtgtgcagaatcatagtatatatccatcaaaatattgaagatgtattaaaacatcagaagcacaatagaagctcaaaag |
22975618 |
T |
|
| Q |
116 |
attatggtaaaagacttgaagaaaagttaactataagtcaacatattggatcagaagaaa |
175 |
Q |
| |
|
| |||||||||||| |||||||| || ||| | |||| |||||||||||||| |||||| |
|
|
| T |
22975617 |
actatggtaaaagatctgaagaaaggtcaaccagaagtgaacatattggatcaaaagaaa |
22975558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 7185311 - 7185530
Alignment:
| Q |
15 |
ggatatactaatatgtgttcaagtgtgcgggatcttataatatatctatcaataaattgaacgtgtatgatagcatcagaagcactagataagctttaaa |
114 |
Q |
| |
|
|||||| ||||||| ||||||||||| | |||| || |||| ||||||||||||||| ||| ||||| | |||||| ||||||| | | |||||| ||| |
|
|
| T |
7185311 |
ggatatgctaatatttgttcaagtgtacatgatcatagaataaatctatcaataaattaaacatgtataagagcatc-gaagcacaaaaaaagcttaaaa |
7185409 |
T |
|
| Q |
115 |
gattatggtaaaagacttgaagaaaagttaactataagtcaacatattggatcagaagaaatg-atgtctctcaaaagttgaagattgacctaatcaaac |
213 |
Q |
| |
|
|| ||||||| |||| |||| ||| || ||| | |||||||||| ||| ||| ||||||| | | | | |||| ||| |||||||| | | ||| || |
|
|
| T |
7185410 |
gactatggtagaagatctgaa-aaatgtcaaccagaagtcaacatcttgtatcggaagaaaagaacgccactcagaagctgaagattaatatcatctgac |
7185508 |
T |
|
| Q |
214 |
tctgtgaagatcatcagactca |
235 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
7185509 |
tctgtgaagatcatctgactca |
7185530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 1777049 - 1777089
Alignment:
| Q |
266 |
tctctatcaaggatctgagtacaattttgtcttcttctgac |
306 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1777049 |
tctctatcaaggatctaagtacaattttgtcttcttctgac |
1777089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 1775303 - 1775391
Alignment:
| Q |
15 |
ggatatactaatatgtgttcaagtgtgcgggatcttataatatatctatcaataaattgaacgtgtatgatagcatcagaagcactaga |
103 |
Q |
| |
|
|||||| ||||| | ||||||||||||| ||||| |||||| |||| ||||| ||||||| | ||| | |||||||||||||||||| |
|
|
| T |
1775303 |
ggatatgctaatctatgttcaagtgtgcaggatcatataatttatccatcaaagtattgaacatatataagagcatcagaagcactaga |
1775391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 13303554 - 13303394
Alignment:
| Q |
15 |
ggatatactaatatgtgttcaagtgtgcgggatcttataatatatctatcaataaattgaacgtgtatgatagcatcagaagcactagataagctttaaa |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| || |||||||| ||||| ||||||| |||| | |||||||||||||| || ||||| ||| |
|
|
| T |
13303554 |
ggatatactaatatttgttcaagtgtgcaagatcatagaatatatccatcaaagtattgaacaagtattaaagcatcagaagcacatgagaagctcaaaa |
13303455 |
T |
|
| Q |
115 |
gattatggtaaaagacttgaagaaaagttaactataagtcaacatattggatcagaagaaa |
175 |
Q |
| |
|
| ||||||| |||| |||||||| || ||| | || || |||||||||||||||||||| |
|
|
| T |
13303454 |
ggctatggtataagatctgaagaaaggtaaaccagaaatccacatattggatcagaagaaa |
13303394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 27118470 - 27118544
Alignment:
| Q |
161 |
ttggatcagaagaaatgatgtctctcaaaagttgaagattgacctaatcaaactctgtgaagatcatcagactca |
235 |
Q |
| |
|
||||||||||||||| | |||| | | |||||||||||| ||| |||| |||||||| ||||||||||||||| |
|
|
| T |
27118470 |
ttggatcagaagaaaaaacgtcttttagaagttgaagattagcctcatcagactctgtggagatcatcagactca |
27118544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 180
Target Start/End: Original strand, 30607978 - 30608089
Alignment:
| Q |
69 |
aattgaacgtgtatgatagcatcagaagcactagataagctttaaagattatggtaaaagacttgaagaaaagttaactataagtcaacatattggatca |
168 |
Q |
| |
|
|||||||| ||||| ||||||| |||||||||||| |||||| ||||| ||| ||| |||| |||||||| || ||| | |||||||||| | |||||| |
|
|
| T |
30607978 |
aattgaacatgtattatagcatgagaagcactagagaagcttaaaagactatagtagaagatatgaagaaaggtcaaccagaagtcaacatctaggatca |
30608077 |
T |
|
| Q |
169 |
gaagaaatgatg |
180 |
Q |
| |
|
||||||| |||| |
|
|
| T |
30608078 |
gaagaaaggatg |
30608089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 30608228 - 30608270
Alignment:
| Q |
264 |
tatctctatcaaggatctgagtacaattttgtcttcttctgac |
306 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
30608228 |
tatctctatcaaggatctgagtacagttttgttttcttctgac |
30608270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 18446369 - 18446320
Alignment:
| Q |
17 |
atatactaatatgtgttcaagtgtgcgggatcttataatatatctatcaa |
66 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||||||| |||||||| ||||| |
|
|
| T |
18446369 |
atatactaatatttgttcaattgtgcaggatcttagaatatatccatcaa |
18446320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 28008 - 27968
Alignment:
| Q |
266 |
tctctatcaaggatctgagtacaattttgtcttcttctgac |
306 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| |||||| |
|
|
| T |
28008 |
tctctatcaaggatctgagttcagttttgtcttcatctgac |
27968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 306
Target Start/End: Original strand, 27485941 - 27485973
Alignment:
| Q |
274 |
aaggatctgagtacaattttgtcttcttctgac |
306 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
27485941 |
aaggatttgagtacaattttgtcttcttctgac |
27485973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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