View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_high_99 (Length: 303)
Name: NF1511_high_99
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_high_99 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 3 - 290
Target Start/End: Original strand, 39234626 - 39234915
Alignment:
| Q |
3 |
aatagtagaatgaaaggatttgtctatgttaccacactcacattctctataaattggagttttaaatcttcatcatcgaaagagagcttttcatagtnnn |
102 |
Q |
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| T |
39234626 |
aatagtaaaatgaaaggatttgtctatgttaccacactcacattctctataaattggagttttaaatcttcatcatcgaaagagagcttttcatagtaaa |
39234725 |
T |
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| Q |
103 |
nnnnnn--cattaaataagacaagaacacaagagatggctatcaataatggagaggaacaacaaaaccaactcatcggagacgcagatcttgctcacaag |
200 |
Q |
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| T |
39234726 |
aaaaaaaacattaaataagacaagaacacaagagatggctatcaataatggagaggaacaacaaaaccaactcatcggagacgcagatcttgctcacaag |
39234825 |
T |
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| Q |
201 |
actctacttcagagtgatgcactttatcaagtatctattcatctattttaatttaattctgttttttatatcaaaatttcatatacatct |
290 |
Q |
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| T |
39234826 |
actctccttcagagtgatgcactttatcaagtatctattcatctattttaatttaattctgttttttataccaaaatttcatatacatct |
39234915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 39053433 - 39053546
Alignment:
| Q |
116 |
taagacaagaacacaagagatggctatcaataatggagaggaacaacaaaaccaactcatcggagacgcagatcttgctcacaagactctacttcagagt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || |||||||||||||||||||||| ||||||||| |
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| T |
39053433 |
taagacaagaacacaagagatggctatcaataatggagaggaacaacaaaaccaaatcattggacacacagatcttgctcacaagactctccttcagagt |
39053532 |
T |
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| Q |
216 |
gatgcactttatca |
229 |
Q |
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| T |
39053533 |
gatgcactttatca |
39053546 |
T |
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