View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1511_low_10 (Length: 662)
Name: NF1511_low_10
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 267 - 654
Target Start/End: Complemental strand, 20686469 - 20686082
Alignment:
| Q |
267 |
caattcggtctcaggcttgtgcctcatttgaagaggggtatctgccaaaagttacatttgtggttgtccaaaagagacatcacacccgattctttccggt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20686469 |
caattcggtctcaggcttgtgcctcatttgaagaggggtatctgccaaaagttacatttgtggttgtccaaaagagacatcacacccgattctttccggt |
20686370 |
T |
|
| Q |
367 |
cagttctgatcagacagataaaagtggaaacataatgccaggtttttcaatttatttcttgcctgccctacaactggtatctgttctcattccaatttat |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20686369 |
cagttctgatcagacagataaaagtggaaacataatgccaggtttttcaatttatttcttgcctgccctacaactggtatctgttctcattccaatttat |
20686270 |
T |
|
| Q |
467 |
ctatatgtactgannnnnnngtttgaaattttgtcaaaggaactgtggtagacacaaccatttgccatcccagggaatttgatttttatctgaacagcca |
566 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20686269 |
ctatatgtactgatttttttgtttgaaattttgtcaaaggaactgtggtagatacaaccatttgccatcccagggaatttgatttttatctgaacagcca |
20686170 |
T |
|
| Q |
567 |
tgctgggattcaagtaatacttattagatcaattagttttatgctcgtatgtactagttgctcaattcacatttaaccaatctgtgct |
654 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20686169 |
tgctgggattcaagtaatacttattagatcaattagttttatgctcgtatgtactagttgctcaattcacatttaaccaatctgtgct |
20686082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 20686715 - 20686545
Alignment:
| Q |
18 |
tcatgcgggtttgaatcagcgcctaacatacgtccatagatcagataaccactgagctgaggtcaattaacatatttaacaaccacagaacatagtgacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20686715 |
tcatgcgggtttgaatcagcgcctaacatacgtccatatatcagataaccactgagctgaggtcaattaacatatttaacaaccacagaacatagtgacc |
20686616 |
T |
|
| Q |
118 |
acagaaatgctcttgctgttttttcttgannnnnnnnctcgttctatgcaagtgccttgtatagatagaataa |
190 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
20686615 |
acagaaatgctcttgctgttttttcttgattttttttctcgttctatgcaagtgccttg--tagatagaataa |
20686545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 305 - 654
Target Start/End: Complemental strand, 20662275 - 20661928
Alignment:
| Q |
305 |
tatctgccaaaagttacatttgtggttgtccaaaagagacatcacacccgattctttccggtcagttctgatcagacagataaaagtggaaacataatgc |
404 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||||||||||||||||||||| ||||||| ||| || ||||||||| |||||||| ||||||| |
|
|
| T |
20662275 |
tatctgccaagagttacttttgtggtggtccaaaagagacatcacacccgtctctttcccacgagtaacgaccagacagatcggagtggaaatataatgc |
20662176 |
T |
|
| Q |
405 |
caggttttt-caatttatttcttgcctgccctacaactggtatctgttctcattccaatttatctatatgtactgannnnnnngtttgaaattttgtcaa |
503 |
Q |
| |
|
||||||||| |||||| ||| |||| ||| | || | ||| ||| | ||||||||||||||| |||||| ||| |||||||||||| |
|
|
| T |
20662175 |
caggttttttcaatttttttattgcttgca-tgcagcgtgtac----tcttttgccaatttatctatatttactgattacgttcttttaaattttgtcaa |
20662081 |
T |
|
| Q |
504 |
aggaactgtggtagacacaaccatttgccatcccagggaatttgatttttatctgaacagccatgctgggattcaagtaatacttattagatcaatta-- |
601 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| |
|
|
| T |
20662080 |
aggaactgtggttgacacaaccatttgccatcccagggaatttgatttttatctgaacagccatgctgggattcaagtaatacttactagttccattaac |
20661981 |
T |
|
| Q |
602 |
gttttatgctcgtatgtactagttgctcaattcacatttaaccaatctgtgct |
654 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
20661980 |
tttatatgctcgtatgtactagttgctcaattggcatttaaccattctgtgct |
20661928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University