View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_104 (Length: 313)
Name: NF1511_low_104
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_104 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 36 - 294
Target Start/End: Complemental strand, 34889062 - 34888804
Alignment:
| Q |
36 |
ttcctcccattttcgccatataatccgtacattggtatgcttgccatttcgccaaaatgtccgcacattggttgctttctttgtgagtccacactaacga |
135 |
Q |
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| T |
34889062 |
ttcctcccattttcgccatataatccgtacattggtatgcttgccatttcgccaaaatgtccgcacattggttgctttctttgtgagtccacactgagaa |
34888963 |
T |
|
| Q |
136 |
aacaatctagtctctagacatatcctccttgatattatccgttatctcaacatatttatgagactgagatgttgagtcttgaatcaaacgtgtagcgtgc |
235 |
Q |
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| T |
34888962 |
aacaatccagtctctagacataacctccttgatactatcttttatctcaacatatttatgagattgagatgttgagtcttgaatcaaacgtgtagcgtgt |
34888863 |
T |
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| Q |
236 |
caacaatcagttctgcaactcacgtctcgatagccaagttcccaagcgaacattagtcc |
294 |
Q |
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| T |
34888862 |
caacaatcaattctgcaactcacgtctcgatagccaagttcccaagcgaacattagtcc |
34888804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 82 - 294
Target Start/End: Complemental strand, 34034864 - 34034652
Alignment:
| Q |
82 |
tttcgccaaaatgtccgcacattggttgctttctttgtgagtccacactaacgaaacaatctagtctctagacatatcctccttgatattatccgttatc |
181 |
Q |
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| T |
34034864 |
tttcgccataaaatccgcacattggttgctttctctttcagtccaatttaacaaaacaatccaatctctagacacaagctccttgatactctccgtaatc |
34034765 |
T |
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| Q |
182 |
tcaacatatttatgagactgagatgttgagtcttgaatcaaacgtgtagcgtgccaacaatcagttctgcaactcacgtctcgatagccaagttcccaag |
281 |
Q |
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| T |
34034764 |
tcaacatatttatgaggctgagatgttgagtcttgactcaataatatagctttccaacaatcacttctacaactcacgtctcgatagccacaatcccaag |
34034665 |
T |
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| Q |
282 |
cgaacattagtcc |
294 |
Q |
| |
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| ||| ||||||| |
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| T |
34034664 |
ccaaccttagtcc |
34034652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 290
Target Start/End: Complemental strand, 45632775 - 45632665
Alignment:
| Q |
180 |
tctcaacatatttatgagactgagatgttgagtcttgaatcaaacgtgtagcgtgccaacaatcagttctgcaactcacgtctcgatagccaagttccca |
279 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||| | |||| | | ||||||| ||||||||||||||||| | ||||| | |||||| |
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| T |
45632775 |
tctcaacatatttattaggctgagatgttgagtcttgaatcaaagatatagcctccatacaatcacttctgcaactcacgtcttggtagccgatttccca |
45632676 |
T |
|
| Q |
280 |
agcgaacatta |
290 |
Q |
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||| ||||||| |
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| T |
45632675 |
agctaacatta |
45632665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 290
Target Start/End: Original strand, 2658478 - 2658588
Alignment:
| Q |
180 |
tctcaacatatttatgagactgagatgttgagtcttgaatcaaacgtgtagcgtgccaacaatcagttctgcaactcacgtctcgatagccaagttccca |
279 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||| | |||| | | ||||||| ||||||||||||||||| | ||||| | |||||| |
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| T |
2658478 |
tctcaacatatttattaggctgagatgttgagtcttgaatcaaagatatagcctccatacaatcacttctgcaactcacgtcttggtagccgatttccca |
2658577 |
T |
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| Q |
280 |
agcgaacatta |
290 |
Q |
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||| ||||||| |
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| T |
2658578 |
agctaacatta |
2658588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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