View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_105 (Length: 311)
Name: NF1511_low_105
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_105 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 6522269 - 6522561
Alignment:
| Q |
1 |
ggtggtttttgtatgtgtttttactatatctttgatatattaaatatttaatgtctcactatgtgttaattctggtttttgcagataagggcaacacgtc |
100 |
Q |
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| T |
6522269 |
ggtggtttttgtatgtgtttttactatatctttgatatattaaatatttaatgtctcact--gtgttaattctggtttttgcagataagggcaacacgtc |
6522366 |
T |
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| Q |
101 |
aagaaatgtcgtccctgtaattttgttgatgatgattttattgtgttcattgttatcatctttttgatcaattaagaacaaggaaagccaaggaaataat |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6522367 |
aagaaatgtcgtccctgtaattttgttgatgttgattttattgtgttcattgttatcatctttttgatcaattaagaacaaggaaagccaaggaaataat |
6522466 |
T |
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| Q |
201 |
ttgaatgtactactatgtattgcatattaaaggaaactcaaggaaataatttgaatatcatgttggtgtaaataaataaaggtgaacgaccatac |
295 |
Q |
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| T |
6522467 |
ttgaatgtactactatgtattgcatattaaaggaaactcaaggaaataatttgaatatcatgttggtgtaaataaataaaggtgaacgaccatac |
6522561 |
T |
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